High-Depth PRNP Sequencing in Brains With Sporadic Creutzfeldt-Jakob Disease.

BACKGROUND AND OBJECTIVES

Sporadic Creutzfeldt-Jakob disease (sCJD) has established genetic risk factors, but, in contrast to genetic and acquired CJD, the initial trigger for misfolded prion aggregation and spread is not known. In this study, we tested the hypotheses that pathologic somatic variants in the prion gene are increased in sCJD, potentially leading to the seeding of misfolded prion protein.

METHODS

High-depth amplicon-based short read sequencing of the coding region was performed on postmortem brain tissue from patients with a clinical and neuropathologic diagnosis of sCJD (n = 142), Alzheimer disease (AD) (n = 51) and controls with no clinical or neuropathologic diagnosis of a neurodegenerative disease (n = 71). Each DNA sample was sequenced twice, including independent PCR amplification, library preparation, and sequencing. We used RePlow to call somatic variants with high sensitivity and specificity and optimal sequence kernel association test to compare variant burden between groups.

RESULTS

Two sCJD cases had somatic (variant allele frequency 0.5-1%) variants not previously identified, but with high in silico predicated pathogenicity. However, the pathogenicity of these variants is uncertain, as both located in the octapeptide repeat region where no point variations have previously been associated with sCJD. There was no overall difference in burden somatic in sCJD compared with controls and a lower burden compared with Alzheimer disease.

DISCUSSION

Somatic variants in are unlikely to play a major role in sCJD but may contribute to the disease mechanism in a minority of cases.