• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种新型香豆素-三唑-噻吩杂化物:合成、表征、ADMET预测、分子对接以及与一系列SARS-CoV-2蛋白的分子动力学研究

A novel coumarin-triazole-thiophene hybrid: synthesis, characterization, ADMET prediction, molecular docking and molecular dynamics studies with a series of SARS-CoV-2 proteins.

作者信息

Omar Rebaz Anwar, Koparir Pelin, Sarac Kamuran, Koparir Metin, Safin Damir A

机构信息

Department of Chemistry, Faculty of Science and Health, Koya University, Koya KOY45, Kurdistan Region - F.R. Iraq Iraq.

Department of Chemistry, Institute of Forensics, Firat University, 23169 Elazig, Turkey.

出版信息

J Chem Sci (Bangalore). 2023;135(1):6. doi: 10.1007/s12039-022-02127-0. Epub 2023 Jan 18.

DOI:10.1007/s12039-022-02127-0
PMID:36686402
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9845830/
Abstract

UNLABELLED

Synthesis, characterization and theoretical studies of a novel coumarin-triazole-thiophene hybrid 4-(((4-ethyl-5-(thiophen-2-yl)-4-1,2,4-triazol-3-yl)thio)methyl)-6,7-dimethyl-2-chromen-2-one (), which was fabricated from 4-ethyl-5-(thiophen-2-yl)-4-1,2,4-triazole-3-thiol and 4-(chloromethyl)-6,7-dimethyl-2-chromen-2-one, are reported. The resulting compound was characterized by microanalysis, IR, H, and C APT NMR spectroscopy. The DFT calculations examined the structure and electronic properties of in gas phase. Its reactivity descriptors and molecular electrostatic potential revealed the reactivity and the reactive centers of . ADMET properties of were evaluated using the respective online tools. It was established that exhibit positive gastrointestinal absorption properties and negative human blood-brain barrier penetration. The Toxicity Model Report revealed that belongs to toxicity class 4. Molecular docking was additionally applied to study the interaction of with some SARS-CoV-2 proteins. It was established that the title compound is active against all the applied proteins with the most efficient interaction with Papain-like protease (PLpro). The interaction of with the applied proteins was also studied using molecular dynamics simulations.

GRAPHICAL ABSTRACT

A novel coumarin-triazole-thiophene hybrid 4-(((4-ethyl-5-(thiophen-2-yl)-4H-1,2,4-triazol-3-yl)thio)methyl)-6,7-dimethyl-2H-chromen-2-one () is reported. The structure and electronic properties of were examined by the DFT calculations. ADMET properties of were also evaluated. Molecular docking and molecular dynamics simulations were applied to study interactions of with a series of the SARS-CoV-2 proteins.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s12039-022-02127-0.

摘要

未标记

报道了一种新型香豆素 - 三唑 - 噻吩杂化物4 - [((4 - 乙基 - 5 - (噻吩 - 2 - 基) - 4H - 1,2,4 - 三唑 - 3 - 基)硫基)甲基] - 6,7 - 二甲基 - 2H - 色烯 - 2 - 酮()的合成、表征及理论研究,该杂化物由4 - 乙基 - 5 - (噻吩 - 2 - 基) - 4H - 1,2,4 - 三唑 - 3 - 硫醇和4 - (氯甲基) - 6,7 - 二甲基 - 2H - 色烯 - 2 - 酮制备而成。通过微量分析、红外光谱、氢谱和碳APT核磁共振光谱对所得化合物进行了表征。密度泛函理论(DFT)计算研究了该化合物在气相中的结构和电子性质。其反应活性描述符和分子静电势揭示了该化合物的反应活性和反应中心。使用相应的在线工具评估了该化合物的ADMET性质。结果表明,该化合物具有良好的胃肠道吸收性质,且难以穿透血脑屏障。毒性模型报告显示,该化合物属于4类毒性。此外,还应用分子对接研究了该化合物与一些SARS-CoV-2蛋白的相互作用。结果表明,该标题化合物对所有应用的蛋白均有活性,与木瓜样蛋白酶(PLpro)的相互作用最为有效。还使用分子动力学模拟研究了该化合物与应用蛋白的相互作用。

图形摘要

报道了一种新型香豆素 - 三唑 - 噻吩杂化物4 - [((4 - 乙基 - 5 - (噻吩 - 2 - 基) - 4H - 1,2,4 - 三唑 - 3 - 基)硫基)甲基] - 6,7 - 二甲基 - 2H - 色烯 - 2 - 酮()。通过DFT计算研究了该化合物的结构和电子性质。还评估了该化合物的ADMET性质。应用分子对接和分子动力学模拟研究了该化合物与一系列SARS-CoV-2蛋白的相互作用。

补充信息

在线版本包含可在10.1007/s12039 - 022 - 02127 - 0获取的补充材料。

相似文献

1
A novel coumarin-triazole-thiophene hybrid: synthesis, characterization, ADMET prediction, molecular docking and molecular dynamics studies with a series of SARS-CoV-2 proteins.一种新型香豆素-三唑-噻吩杂化物:合成、表征、ADMET预测、分子对接以及与一系列SARS-CoV-2蛋白的分子动力学研究
J Chem Sci (Bangalore). 2023;135(1):6. doi: 10.1007/s12039-022-02127-0. Epub 2023 Jan 18.
2
In silico analyses of betulin: DFT studies, corrosion inhibition properties, ADMET prediction, and molecular docking with a series of SARS-CoV-2 and monkeypox proteins.桦木醇的计算机模拟分析:密度泛函理论研究、缓蚀性能、ADMET预测以及与一系列新冠病毒和猴痘病毒蛋白的分子对接
Struct Chem. 2022 Oct 27:1-12. doi: 10.1007/s11224-022-02079-8.
3
A Novel Ambroxol-Derived Tetrahydroquinazoline with a Potency against SARS-CoV-2 Proteins.一种新型氨溴索衍生的四氢喹唑啉,对 SARS-CoV-2 蛋白具有抑制活性。
Int J Mol Sci. 2023 Feb 28;24(5):4660. doi: 10.3390/ijms24054660.
4
Synthesis, computational quantum chemical study, in silico ADMET and molecular docking analysis, in vitro biological evaluation of a novel sulfur heterocyclic thiophene derivative containing 1,2,3-triazole and pyridine moieties as a potential human topoisomerase IIα inhibiting anticancer agent.合成、计算量子化学研究、计算机辅助药物设计和分子对接分析、新型含 1,2,3-三唑和吡啶部分的硫杂环噻吩衍生物的体外生物学评价作为一种潜在的人类拓扑异构酶 IIα 抑制剂的抗癌剂。
Comput Biol Chem. 2019 Apr;79:73-82. doi: 10.1016/j.compbiolchem.2019.01.013. Epub 2019 Jan 28.
5
A novel imidazole-based azo molecule: synthesis, characterization, quantum chemical calculations, molecular docking, molecular dynamics simulations and ADMET properties.一种新型咪唑基偶氮分子:合成、表征、量子化学计算、分子对接、分子动力学模拟和 ADMET 性质。
J Mol Model. 2023 Jul 5;29(8):226. doi: 10.1007/s00894-023-05625-1.
6
Combined DFT and Monte Carlo simulation studies of potential corrosion inhibition properties of coumarin derivatives.香豆素衍生物潜在缓蚀性能的密度泛函理论(DFT)与蒙特卡罗模拟联合研究
J Mol Model. 2024 Jul 29;30(8):288. doi: 10.1007/s00894-024-06090-0.
7
Synthesis, spectroscopic characterization of novel phthalimides derivatives bearing a 1,2,3-triazole unit and examination as potential SARS-CoV-2 inhibitors via studies.新型含1,2,3-三唑单元的邻苯二甲酰亚胺衍生物的合成、光谱表征及通过研究作为潜在的SARS-CoV-2抑制剂的考察。
J Mol Struct. 2022 Aug 5;1261:132915. doi: 10.1016/j.molstruc.2022.132915. Epub 2022 Mar 23.
8
Synthesis, structural, spectral, antioxidant, bioactivity and molecular docking investigations of a novel triazole derivative.新型三唑衍生物的合成、结构、光谱、抗氧化、生物活性及分子对接研究。
J Biomol Struct Dyn. 2022 Sep;40(14):6642-6655. doi: 10.1080/07391102.2021.1887764. Epub 2021 Feb 17.
9
Automated Radiosynthesis and Molecular Docking Studies of Coumarin- Triazole Hybrid with fluorine-18: A feasibility study.香豆素-三唑杂合体的自动化放射性合成与分子对接研究:可行性研究。
Curr Radiopharm. 2022;15(1):40-49. doi: 10.2174/1874471014666210129141221.
10
Molecular structure, NBO analysis of the hydrogen-bonded interactions, spectroscopic (FT-IR, FT-Raman), drug likeness and molecular docking of the novel anti COVID-2 molecule (2E)-N-methyl-2-[(4-oxo-4H-chromen-3-yl)methylidene]-hydrazinecarbothioamide (Dimer) - quantum chemical approach.新型抗 COVID-2 分子(2E)-N-甲基-2-[(4-氧代-4H-色烯-3-基)亚甲基]-肼甲硫酰胺(二聚体)的分子结构、氢键相互作用的 NBO 分析、光谱(FT-IR、FT-Raman)、药物相似性和分子对接 - 量子化学方法。
Spectrochim Acta A Mol Biomol Spectrosc. 2021 Apr 15;251:119388. doi: 10.1016/j.saa.2020.119388. Epub 2020 Dec 29.

引用本文的文献

1
Developing Novel Beta-Secretase Inhibitors in a Computer Model as a Possible Treatment for Alzheimer's Disease.在计算机模型中开发新型β-分泌酶抑制剂作为阿尔茨海默病的一种可能治疗方法。
Adv Pharmacol Pharm Sci. 2025 Mar 31;2025:5528793. doi: 10.1155/adpp/5528793. eCollection 2025.
2
Effect of L-theanine in the prevention of 2,4- dinitrochlorobenzene induced atopic dermatitis: A study in BALB/c mice model.L-茶氨酸在预防2,4-二硝基氯苯诱导的特应性皮炎中的作用:在BALB/c小鼠模型中的研究
Toxicol Rep. 2025 Mar 1;14:101984. doi: 10.1016/j.toxrep.2025.101984. eCollection 2025 Jun.
3
DFT and Monte Carlo Analysis of the Anti-corrosion Behavior of a Series of the Purine Derivatives.

本文引用的文献

1
New thiophene-derived -aminophosphonic acids: Synthesis under microwave irradiations, antioxidant and antifungal activities, DFT investigations and SARS-CoV-2 main protease inhibition.新型噻吩衍生的氨基膦酸:微波辐射下的合成、抗氧化和抗真菌活性、密度泛函理论研究及对严重急性呼吸综合征冠状病毒2主蛋白酶的抑制作用
J Mol Struct. 2022 Feb 15;1250:131853. doi: 10.1016/j.molstruc.2021.131853. Epub 2021 Nov 3.
2
In silico analyses of betulin: DFT studies, corrosion inhibition properties, ADMET prediction, and molecular docking with a series of SARS-CoV-2 and monkeypox proteins.桦木醇的计算机模拟分析:密度泛函理论研究、缓蚀性能、ADMET预测以及与一系列新冠病毒和猴痘病毒蛋白的分子对接
Struct Chem. 2022 Oct 27:1-12. doi: 10.1007/s11224-022-02079-8.
3
一系列嘌呤衍生物的耐腐蚀性能的密度泛函理论(DFT)与蒙特卡罗分析
J Fluoresc. 2025 Feb 20. doi: 10.1007/s10895-025-04178-1.
4
Potential Corrosion Inhibition Properties of Flavone Derivatives on the Cu(111) Surface: A Combined DFT and Monte Carlo Simulation Study.黄酮衍生物对Cu(111)表面的潜在缓蚀性能:密度泛函理论与蒙特卡罗模拟相结合的研究
J Fluoresc. 2025 Jan 8. doi: 10.1007/s10895-024-04117-6.
5
Combined DFT and Monte Carlo simulation studies of potential corrosion inhibition properties of coumarin derivatives.香豆素衍生物潜在缓蚀性能的密度泛函理论(DFT)与蒙特卡罗模拟联合研究
J Mol Model. 2024 Jul 29;30(8):288. doi: 10.1007/s00894-024-06090-0.
6
Recent Trends in the Synthesis and Bioactivity of Coumarin, Coumarin-Chalcone, and Coumarin-Triazole Molecular Hybrids.香豆素、香豆素-查耳酮和香豆素-三唑分子杂化物的合成与生物活性的最新趋势
Molecules. 2024 Feb 27;29(5):1026. doi: 10.3390/molecules29051026.
7
Benzimidazole-Triazole Hybrids as Antimicrobial and Antiviral Agents: A Systematic Review.作为抗菌和抗病毒剂的苯并咪唑 - 三唑杂化物:一项系统综述
Antibiotics (Basel). 2023 Jul 22;12(7):1220. doi: 10.3390/antibiotics12071220.
8
A Novel Ambroxol-Derived Tetrahydroquinazoline with a Potency against SARS-CoV-2 Proteins.一种新型氨溴索衍生的四氢喹唑啉,对 SARS-CoV-2 蛋白具有抑制活性。
Int J Mol Sci. 2023 Feb 28;24(5):4660. doi: 10.3390/ijms24054660.
Prescribed drugs containing nitrogen heterocycles: an overview.
含氮杂环的处方药:概述
RSC Adv. 2020 Dec 15;10(72):44247-44311. doi: 10.1039/d0ra09198g. eCollection 2020 Dec 9.
4
Natural coumarins as potential anti-SARS-CoV-2 agents supported by docking analysis.通过对接分析支持天然香豆素作为潜在的抗SARS-CoV-2药物。
RSC Adv. 2021 May 7;11(28):16970-16979. doi: 10.1039/d1ra01989a. eCollection 2021 May 6.
5
Computational Analysis of Molnupiravir.莫努匹韦的计算分析。
Int J Mol Sci. 2022 Jan 28;23(3):1508. doi: 10.3390/ijms23031508.
6
Synthesis of New Binary Thiazole-Based Heterocycles and Their Molecular Docking Study as COVID-19 Main Protease (M) Inhibitors.新型基于噻唑的二元杂环化合物的合成及其作为COVID-19主要蛋白酶(M)抑制剂的分子对接研究。
Russ J Gen Chem. 2021;91(9):1767-1773. doi: 10.1134/S1070363221090231. Epub 2021 Oct 27.
7
Crucial Mutations of Spike Protein on SARS-CoV-2 Evolved to Variant Strains Escaping Neutralization of Convalescent Plasmas and RBD-Specific Monoclonal Antibodies.刺突蛋白上对 SARS-CoV-2 进化的关键突变导致变异株逃避恢复期血浆和 RBD 特异性单克隆抗体的中和作用。
Front Immunol. 2021 Aug 17;12:693775. doi: 10.3389/fimmu.2021.693775. eCollection 2021.
8
-Aminophosphonates 4-XCH-NH-CH(4-BrCH)-P(O)(OPr) (X = H, Br, MeO): Crystal structures, Hirshfeld surface analysis, computational studies and in silico molecular docking with the SARS-CoV-2 proteins.-氨基膦酸酯4-XCH-NH-CH(4-BrCH)-P(O)(OPr)(X = H、Br、MeO):晶体结构、 Hirshfeld表面分析、计算研究以及与SARS-CoV-2蛋白的计算机模拟分子对接
Tetrahedron. 2021 Sep 24;97:132376. doi: 10.1016/j.tet.2021.132376. Epub 2021 Aug 3.
9
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings.AutoDock Vina 1.2.0:新的对接方法、扩展的力场及Python绑定
J Chem Inf Model. 2021 Aug 23;61(8):3891-3898. doi: 10.1021/acs.jcim.1c00203. Epub 2021 Jul 19.
10
New quinoline-triazole conjugates: Synthesis, and antiviral properties against SARS-CoV-2.新型喹啉-三唑化合物的合成及其抗 SARS-CoV-2 的抗病毒活性。
Bioorg Chem. 2021 Sep;114:105117. doi: 10.1016/j.bioorg.2021.105117. Epub 2021 Jun 23.