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Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome.

作者信息

Boktor Joseph C, Sharon Gil, Verhagen Metman Leo A, Hall Deborah A, Engen Phillip A, Zreloff Zoe, Hakim Daniel J, Bostick John W, Ousey James, Lange Danielle, Humphrey Gregory, Ackermann Gail, Carlin Martha, Knight Rob, Keshavarzian Ali, Mazmanian Sarkis K

机构信息

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.

Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, Maryland, USA.

出版信息

Mov Disord. 2023 Mar;38(3):399-409. doi: 10.1002/mds.29300. Epub 2023 Jan 24.


DOI:10.1002/mds.29300
PMID:36691982
Abstract

BACKGROUND: The gut microbiome is altered in several neurologic disorders, including Parkinson's disease (PD). OBJECTIVES: The aim is to profile the fecal gut metagenome in PD for alterations in microbial composition, taxon abundance, metabolic pathways, and microbial gene products, and their relationship with disease progression. METHODS: Shotgun metagenomic sequencing was conducted on 244 stool donors from two independent cohorts in the United States, including individuals with PD (n = 48, n = 47, respectively), environmental household controls (HC, n = 29, n = 30), and community population controls (PC, n = 41, n = 49). Microbial features consistently altered in PD compared to HC and PC subjects were identified. Data were cross-referenced to public metagenomic data sets from two previous studies in Germany and China to determine generalizable microbiome features. RESULTS: We find several significantly altered taxa between PD and controls within the two cohorts sequenced in this study. Analysis across global cohorts returns consistent changes only in Intestinimonas butyriciproducens. Pathway enrichment analysis reveals disruptions in microbial carbohydrate and lipid metabolism and increased amino acid and nucleotide metabolism in PD. Global gene-level signatures indicate an increased response to oxidative stress, decreased cellular growth and microbial motility, and disrupted intercommunity signaling. CONCLUSIONS: A metagenomic meta-analysis of PD shows consistent and novel alterations in functional metabolic potential and microbial gene abundance across four independent studies from three continents. These data reveal that stereotypic changes in the functional potential of the gut microbiome are a consistent feature of PD, highlighting potential diagnostic and therapeutic avenues for future research. © 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.

摘要

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J Cent Nerv Syst Dis. 2025-8-13

[2]
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Int J Mol Sci. 2025-7-21

[3]
Human gut microbiome gene co-expression network reveals a loss in taxonomic and functional diversity in Parkinson's disease.

NPJ Biofilms Microbiomes. 2025-7-24

[4]
Deep Learning Transforms Phage-Host Interaction Discovery from Metagenomic Data.

bioRxiv. 2025-6-27

[5]
Single-cell multiomics identifies both shared and unique features of immune dysfunction in Parkinson's disease and inflammatory bowel disease colon, plasma and stool.

bioRxiv. 2025-6-11

[6]
The gut-brain axis in early Parkinson's disease: from prodrome to prevention.

J Neurol. 2025-5-21

[7]
Machine learning-based meta-analysis reveals gut microbiome alterations associated with Parkinson's disease.

Nat Commun. 2025-5-7

[8]
Distinct gut microbiome characteristics and dynamics in patients with Parkinson's disease based on the presence of premotor rapid-eye movement sleep behavior disorders.

Microbiome. 2025-4-30

[9]
Gut microbiota and blood metabolites: unveiling their roles in hippocampal volume changes through Mendelian randomization and mediation analysis.

Metab Brain Dis. 2025-4-12

[10]
Modeling microbiome-trait associations with taxonomy-adaptive neural networks.

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