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泰国儿科患者肌肉疾病的外显子组测序应用:诊断率和突变谱。

Utilisation of exome sequencing for muscular disorders in Thai paediatric patients: diagnostic yield and mutational spectrum.

机构信息

Department of Paediatrics, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.

Department of Paediatrics, Samutprakan Hospital, Samutprakan, 10270, Thailand.

出版信息

Sci Rep. 2023 Jan 25;13(1):1376. doi: 10.1038/s41598-023-28405-6.

DOI:10.1038/s41598-023-28405-6
PMID:36697461
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9876991/
Abstract

Muscular dystrophies and congenital myopathies are heterogeneous groups of inherited muscular disorders. An accurate diagnosis is challenging due to their complex clinical presentations and genetic heterogeneity. This study aimed to determine the utilisation of exome sequencing (ES) for Thai paediatric patients with muscular disorders. Of 176 paediatric patients suspected of genetic/inherited myopathies, 133 patients received a molecular diagnosis after performing conventional investigations, single gene testing, and gene panels. The remaining 43 patients from 42 families could be classified into three groups: Group 1, MLPA-negative Duchenne muscular dystrophy (DMD) with 9 patients (9/43; 21%), Group 2, other muscular dystrophies (MD) with 18 patients (18/43; 42%) and Group 3, congenital myopathies (CM) with 16 patients (16/43; 37%). All underwent exome sequencing which could identify pathogenic variants in 8/9 (89%), 14/18 (78%), and 8/16 (50%), for each Group, respectively. Overall, the diagnostic yield of ES was 70% (30/43) and 36 pathogenic/likely pathogenic variants in 14 genes were identified. 18 variants have never been previously reported. Molecular diagnoses provided by ES changed management in 22/30 (73%) of the patients. Our study demonstrates the clinical utility and implications of ES in inherited myopathies.

摘要

肌肉萎缩症和先天性肌病是一组异质性遗传性肌肉疾病。由于其复杂的临床表现和遗传异质性,准确诊断具有挑战性。本研究旨在确定外显子组测序(ES)在泰国儿科肌肉疾病患者中的应用。在 176 名疑似遗传性/遗传性肌病的儿科患者中,133 名患者在进行常规检查、单基因检测和基因面板检测后获得了分子诊断。其余 43 名来自 42 个家庭的患者可分为三组:组 1,9 名 MLPA 阴性杜氏肌营养不良症(DMD)患者(9/43;21%),组 2,其他肌营养不良症(MD)患者 18 名(18/43;42%)和组 3,先天性肌病(CM)患者 16 名(16/43;37%)。所有患者均接受外显子组测序,分别可在每组中鉴定出 8/9(89%)、14/18(78%)和 8/16(50%)的致病性变异。总体而言,ES 的诊断率为 70%(30/43),在 14 个基因中发现了 36 个致病性/可能致病性变异。其中 18 个变异从未被报道过。ES 提供的分子诊断改变了 30/43(73%)患者的治疗方法。本研究证明了 ES 在遗传性肌病中的临床应用和意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca36/9876991/584839df8ae1/41598_2023_28405_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca36/9876991/b0234fe87c18/41598_2023_28405_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca36/9876991/584839df8ae1/41598_2023_28405_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca36/9876991/b0234fe87c18/41598_2023_28405_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ca36/9876991/584839df8ae1/41598_2023_28405_Fig2_HTML.jpg

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本文引用的文献

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The Thai reference exome (T-REx) variant database.泰国参考外显子组(T-REx)变异数据库。
Clin Genet. 2021 Dec;100(6):703-712. doi: 10.1111/cge.14060. Epub 2021 Sep 22.
2
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PLoS One. 2021 Jun 9;16(6):e0252953. doi: 10.1371/journal.pone.0252953. eCollection 2021.
3
Making sense of missense variants in TTN-related congenital myopathies.解析 TTN 相关性先天性肌病中的错义变异。
Acta Neuropathol. 2021 Mar;141(3):431-453. doi: 10.1007/s00401-020-02257-0. Epub 2021 Jan 15.
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The 2021 version of the gene table of neuromuscular disorders (nuclear genome).2021年版神经肌肉疾病基因表(核基因组)。
Neuromuscul Disord. 2020 Dec;30(12):1008-1048. doi: 10.1016/j.nmd.2020.11.009. Epub 2020 Nov 22.
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Epidemiological study and genetic characterization of inherited muscle diseases in a northern Spanish region.西班牙北部一个地区遗传性肌肉疾病的流行病学研究和遗传特征分析。
Orphanet J Rare Dis. 2019 Dec 2;14(1):276. doi: 10.1186/s13023-019-1227-x.
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Congenital myasthenic syndromes.先天性肌无力综合征。
Orphanet J Rare Dis. 2019 Feb 26;14(1):57. doi: 10.1186/s13023-019-1025-5.
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Diagnostic Utility of Whole Exome Sequencing in the Neuromuscular Clinic.全外显子组测序在神经肌肉疾病门诊的诊断效用
Neuropediatrics. 2019 Apr;50(2):96-102. doi: 10.1055/s-0039-1677734. Epub 2019 Jan 21.
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Small mutation screening in the DMD gene by whole exome sequencing of an argentine Duchenne/Becker muscular dystrophies cohort.采用全外显子组测序对阿根廷杜兴/贝克肌营养不良症队列进行 DMD 基因突变筛查。
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