Liu Yong, Zhang Jing, Du Zefan, Huang Junbin, Cheng Yucai, Yi Wenfang, Li Tianwen, Yang Jing, Chen Chun
Division of Hematology/Oncology, Department of Pediatrics, The Seventh Affiliated Hospital of Sun Yat-Sen University, Shenzhen, China.
Department of Breast and Thyroid Surgery, Guangzhou Women and Children's Medical Center, Guangzhou, China.
Front Genet. 2023 Jan 9;13:1087938. doi: 10.3389/fgene.2022.1087938. eCollection 2022.
Tyrosyl phosphorylation is carried out by a group of enzymes known as non-receptor protein tyrosine phosphatases (PTPNs). In the current investigation, it is hoped to shed light on the relationships between the expression patterns of family members and the prognosis of acute myeloid leukemia (AML). expression was examined using GEPIA and GEO databases. To investigate the connection between expression and survival in AML patients, we downloaded data from the Broad TCGA Firehose and Clinical Proteomic Tumor Analysis (CPTAC) of the Cancer Genome Atlas (TCGA). We used quantitative real-time PCR (qRT-PCR) to confirm that essential genes were performed in clinical samples and cell lines. We then used western blot to verify that the genes expressed in the above databases were positive in normal tissues, AML patient samples, and AML cell lines. Next, we investigated associations between genome-wide expression profiles and expression using the GEO datasets. We investigated the interactive exploration of multidimensional cancer genomics using the cBioPortal datasets. Using the DAVID database, a study of gene ontology enrichment was performed. The protein-protein interaction (PPI) network was created using the STRING portal, and the gene-gene interaction network was performed using GeneMANIA. Data from GEO and GEPIA revealed that most family members were linked to AML. Patients with leukemia have elevated levels of several members. All of the AML patients' poor overall survival (OS, < .05) was significantly linked with higher expression of , , and . Additionally, clinical samples showed that the expression of , , , and was higher than normal in AML patients ( = .0116, = .0034, = .0092, and = .0057, respectively) and AML cell lines ( = .0004, = .0035, = .0357, and = .0177, respectively). Western blotting results showed that the expression of in AML samples and AML cell lines was significantly higher than that in normal control samples. Differentially expressed PTPN family members were found in AML. The prognosis of patients and gene expression were shown to be correlated. is one of these members and may be used as an AML diagnostic and prognostic marker.
酪氨酸磷酸化由一组称为非受体蛋白酪氨酸磷酸酶(PTPNs)的酶进行。在当前的研究中,希望能够阐明家族成员的表达模式与急性髓系白血病(AML)预后之间的关系。使用GEPIA和GEO数据库检测表达情况。为了研究AML患者中表达与生存之间的联系,我们从癌症基因组图谱(TCGA)的Broad TCGA Firehose和临床蛋白质组肿瘤分析(CPTAC)下载了数据。我们使用定量实时PCR(qRT-PCR)来确认在临床样本和细胞系中检测到关键基因。然后我们使用蛋白质印迹法来验证上述数据库中表达的基因在正常组织、AML患者样本和AML细胞系中呈阳性。接下来,我们使用GEO数据集研究全基因组表达谱与表达之间的关联。我们使用cBioPortal数据集研究多维癌症基因组学的交互式探索。使用DAVID数据库进行基因本体富集研究。使用STRING门户创建蛋白质-蛋白质相互作用(PPI)网络,并使用GeneMANIA进行基因-基因相互作用网络分析。来自GEO和GEPIA的数据显示,大多数家族成员与AML有关。白血病患者中几个成员的水平升高。所有AML患者的总生存期(OS,<0.05)较差均与更高的、和表达显著相关。此外,临床样本显示,AML患者(分别为=0.0116、=0.0034、=0.0092和=0.0057)和AML细胞系(分别为=0.0004、=0.0035、=0.0357和=0.0177)中、、和的表达高于正常水平。蛋白质印迹结果显示,AML样本和AML细胞系中的表达明显高于正常对照样本。在AML中发现了差异表达的PTPN家族成员。患者的预后与基因表达相关。是这些成员之一,可能用作AML的诊断和预后标志物。