College of Chemistry & Chemical Engineering, Lanzhou University; South Tianshui Road 222, Lanzhou, Gansu 730000, PR China.
College of Chemistry & Chemical Engineering, Lanzhou University; South Tianshui Road 222, Lanzhou, Gansu 730000, PR China.
Comput Methods Programs Biomed. 2023 Feb;229:107295. doi: 10.1016/j.cmpb.2022.107295. Epub 2022 Dec 1.
Efforts to alleviate the ongoing coronavirus disease 2019 (COVID-19) crisis showed that rapid, sensitive, and large-scale screening is critical for controlling the current infection and that of ongoing pandemics.
Here, we explored the potential of vibrational spectroscopy coupled with machine learning to screen COVID-19 patients in its initial stage. Herein presented is a hybrid classification model called grey wolf optimized support vector machine (GWO-SVM). The proposed model was tested and comprehensively compared with other machine learning models via vibrational spectroscopic fingerprinting including saliva FTIR spectra dataset and serum Raman scattering spectra dataset.
For the unknown vibrational spectra, the presented GWO-SVM model provided an accuracy, specificity and F1_score value of 0.9825, 0.9714 and 0.9778 for saliva FTIR spectra dataset, respectively, while an overall accuracy, specificity and F1_score value of 0.9085, 0.9552 and 0.9036 for serum Raman scattering spectra dataset, respectively, which showed superiority than those of state-of-the-art models, thereby suggesting the suitability of the GWO-SVM model to be adopted in a clinical setting for initial screening of COVID-19 patients.
Prospectively, the presented vibrational spectroscopy based GWO-SVM model can facilitate in screening of COVID-19 patients and alleviate the medical service burden. Therefore, herein proof-of-concept results showed the chance of vibrational spectroscopy coupled with GWO-SVM model to help COVID-19 diagnosis and have the potential be further used for early screening of other infectious diseases.
为缓解当前的 2019 冠状病毒病(COVID-19)危机而做出的努力表明,快速、敏感和大规模的筛查对于控制当前感染和正在发生的大流行至关重要。
在这里,我们探索了将振动光谱与机器学习相结合来筛选 COVID-19 患者的早期阶段的潜力。这里提出的是一种名为灰狼优化支持向量机(GWO-SVM)的混合分类模型。该模型通过振动光谱指纹图谱(包括唾液傅里叶变换红外光谱数据集和血清拉曼散射光谱数据集)进行了测试,并与其他机器学习模型进行了全面比较。
对于未知的振动光谱,所提出的 GWO-SVM 模型分别提供了唾液傅里叶变换红外光谱数据集的 0.9825、0.9714 和 0.9778 的准确率、特异性和 F1 得分值,而血清拉曼散射光谱数据集的总准确率、特异性和 F1 得分值分别为 0.9085、0.9552 和 0.9036,优于最先进的模型,这表明 GWO-SVM 模型适合在临床环境中用于 COVID-19 患者的初步筛选。
从前景看,所提出的基于振动光谱的 GWO-SVM 模型可以促进 COVID-19 患者的筛选,减轻医疗服务负担。因此,本文的概念验证结果表明,振动光谱与 GWO-SVM 模型相结合有帮助 COVID-19 诊断的机会,并有可能进一步用于其他传染病的早期筛查。