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人类癌症中对非整倍体的癌基因样依赖。

Oncogene-like addiction to aneuploidy in human cancers.

作者信息

Girish Vishruth, Lakhani Asad A, Scaduto Christine M, Thompson Sarah L, Brown Leanne M, Hagenson Ryan A, Sausville Erin L, Mendelson Brianna E, Lukow Devon A, Yuan Monet Lou, Kandikuppa Pranav K, Stevens Eric C, Lee Sophia N, Salovska Barbora, Li Wenxue, Smith Joan C, Taylor Alison M, Martienssen Robert A, Liu Yansheng, Sun Ruping, Sheltzer Jason M

机构信息

Yale University School of Medicine, New Haven, CT 06511.

Johns Hopkins University School of Medicine, Baltimore, MD 21205.

出版信息

bioRxiv. 2023 Jan 10:2023.01.09.523344. doi: 10.1101/2023.01.09.523344.

DOI:10.1101/2023.01.09.523344
PMID:36711674
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9882055/
Abstract

Most cancers exhibit aneuploidy, but its functional significance in tumor development is controversial. Here, we describe ReDACT (Restoring Disomy in Aneuploid cells using CRISPR Targeting), a set of chromosome engineering tools that allow us to eliminate specific aneuploidies from cancer genomes. Using ReDACT, we created a panel of isogenic cells that have or lack common aneuploidies, and we demonstrate that trisomy of chromosome 1q is required for malignant growth in cancers harboring this alteration. Mechanistically, gaining chromosome 1q increases the expression of MDM4 and suppresses TP53 signaling, and we show that TP53 mutations are mutually-exclusive with 1q aneuploidy in human cancers. Thus, specific aneuploidies play essential roles in tumorigenesis, raising the possibility that targeting these "aneuploidy addictions" could represent a novel approach for cancer treatment.

摘要

大多数癌症表现出非整倍体现象,但其在肿瘤发生发展中的功能意义仍存在争议。在此,我们描述了ReDACT(利用CRISPR靶向在非整倍体细胞中恢复二倍体),这是一组染色体工程工具,使我们能够从癌症基因组中消除特定的非整倍体。利用ReDACT,我们创建了一组具有或缺乏常见非整倍体的同基因细胞系,并证明在携带这种改变的癌症中,1号染色体长臂三体是恶性生长所必需的。从机制上讲,获得1号染色体长臂会增加MDM4的表达并抑制TP53信号传导,并且我们表明在人类癌症中TP53突变与1号染色体长臂非整倍体相互排斥。因此,特定的非整倍体在肿瘤发生中起着至关重要的作用,这增加了靶向这些“非整倍体成瘾”可能代表一种新型癌症治疗方法的可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/643641f099d6/nihpp-2023.01.09.523344v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/d2bd9f5f050c/nihpp-2023.01.09.523344v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/38d862e8377b/nihpp-2023.01.09.523344v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/3f3758d70344/nihpp-2023.01.09.523344v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/4477f81cb482/nihpp-2023.01.09.523344v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/f86bb5996d30/nihpp-2023.01.09.523344v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/643641f099d6/nihpp-2023.01.09.523344v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/d2bd9f5f050c/nihpp-2023.01.09.523344v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/38d862e8377b/nihpp-2023.01.09.523344v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/3f3758d70344/nihpp-2023.01.09.523344v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/4477f81cb482/nihpp-2023.01.09.523344v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/f86bb5996d30/nihpp-2023.01.09.523344v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d3/9882055/643641f099d6/nihpp-2023.01.09.523344v1-f0006.jpg

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本文引用的文献

1
Evolving copy number gains promote tumor expansion and bolster mutational diversification.不断进化的拷贝数增益促进肿瘤扩张并增强突变多样化。
Nat Commun. 2024 Mar 6;15(1):2025. doi: 10.1038/s41467-024-46414-5.
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Prevalence, causes and impact of TP53-loss phenocopying events in human tumors.人类肿瘤中 TP53 缺失表型模拟事件的流行率、原因和影响。
BMC Biol. 2023 Apr 24;21(1):92. doi: 10.1186/s12915-023-01595-1.
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Somatic variant detection from multi-sampled genomic sequencing data of tumor specimens using the ith.Variant pipeline.
使用 ith.Variant 管道从肿瘤样本的多采样基因组测序数据中检测体细胞变异。
STAR Protoc. 2023 Mar 17;4(1):101927. doi: 10.1016/j.xpro.2022.101927. Epub 2022 Dec 29.
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Extensive protein dosage compensation in aneuploid human cancers.非整倍体人类癌症中的广泛蛋白质剂量补偿。
Genome Res. 2022 Jul;32(7):1254-1270. doi: 10.1101/gr.276378.121. Epub 2022 Jun 14.
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The Metabolic and Non-Metabolic Roles of UCK2 in Tumor Progression.尿苷激酶2(UCK2)在肿瘤进展中的代谢和非代谢作用
Front Oncol. 2022 May 20;12:904887. doi: 10.3389/fonc.2022.904887. eCollection 2022.
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Genome-wide identification and analysis of prognostic features in human cancers.全基因组鉴定和分析人类癌症的预后特征。
Cell Rep. 2022 Mar 29;38(13):110569. doi: 10.1016/j.celrep.2022.110569.
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Genomic characterization of metastatic patterns from prospective clinical sequencing of 25,000 patients.25000 例患者前瞻性临床测序的转移模式的基因组特征分析。
Cell. 2022 Feb 3;185(3):563-575.e11. doi: 10.1016/j.cell.2022.01.003.
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Whole chromosome loss and genomic instability in mouse embryos after CRISPR-Cas9 genome editing.CRISPR-Cas9 基因组编辑后小鼠胚胎的整条染色体丢失和基因组不稳定性。
Nat Commun. 2021 Oct 6;12(1):5855. doi: 10.1038/s41467-021-26097-y.
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Chromosomal instability accelerates the evolution of resistance to anti-cancer therapies.染色体不稳定性加速了对癌症疗法的耐药性的进化。
Dev Cell. 2021 Sep 13;56(17):2427-2439.e4. doi: 10.1016/j.devcel.2021.07.009. Epub 2021 Aug 4.
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Co-occurrence and mutual exclusivity: what cross-cancer mutation patterns can tell us.共现与互斥:跨癌种突变模式能告诉我们什么。
Trends Cancer. 2021 Sep;7(9):823-836. doi: 10.1016/j.trecan.2021.04.009. Epub 2021 May 22.