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G-四链体结构作为“开关”调节铁死亡 HepG2 细胞中 ATF4 的表达。

G-Quadruplex Structures as a "Switch" Regulate ATF4 Expression in Ferroptotic HepG2 Cells.

机构信息

Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan 610065, China.

出版信息

ACS Chem Biol. 2023 Feb 17;18(2):273-284. doi: 10.1021/acschembio.2c00615. Epub 2023 Feb 1.

Abstract

G-quadruplex (G4) is a noncanonical structure folded in a widespread manner by guanine-rich tandem repeated sequences. As a key response factor, activating transcription factor 4 (ATF4) has dual functions in managing iron-dependent ferroptosis by regulating amino acid synthesis and antioxidant-related gene expression. In our study, the activity of ATF4 expression was elevated in HepG2 cells induced by erastin. Based on preliminary bioinformatics analyses, the G-tract region, named WT, had high potential to form G4, and it was found that PDS could markedly weaken the increase of ATF4 expression by reducing the sensitivity of HepG2 cells toward erastin. In circular dichroism spectra, WT oligonucleotides showed characteristic molar ellipticity at specific wavelengths of parallel G4 structures, while corresponding single-base mutants possessed a weaker ability to form G4, which were consistent with immunostaining results. In addition, endogenous G4 formed by the WT motif was significantly destroyed in HepG2 cells treated with erastin. After being transfected with WT oligonucleotides, the levels of ATF4 mRNA decreased significantly regardless of being treated with erastin or not. Meanwhile, mutations of G-tracts could advantageously impact the luciferase expression downstream of an ATF4 promoter in reporter assays, manifesting that the decrease of endogenous G4 in the ATF4 promoter was positively associated with the expression enhanced by erastin in HepG2 cells.

摘要

四链体(G4)是一种由富含鸟嘌呤的串联重复序列广泛折叠形成的非经典结构。作为关键的反应因子,激活转录因子 4(ATF4)通过调节氨基酸合成和抗氧化相关基因表达,具有双重功能来管理铁依赖性的铁死亡。在我们的研究中,用 erastin 诱导 HepG2 细胞后,ATF4 的表达活性升高。基于初步的生物信息学分析,G 链区命名为 WT,具有形成 G4 的高潜力,并且发现 PDS 可以通过降低 HepG2 细胞对 erastin 的敏感性来显著减弱 ATF4 表达的增加。在圆二色性光谱中,WT 寡核苷酸在平行 G4 结构的特定波长处显示出特征摩尔旋光性,而相应的单碱基突变体形成 G4 的能力较弱,这与免疫染色结果一致。此外,WT 基序形成的内源性 G4 在用 erastin 处理的 HepG2 细胞中明显被破坏。用 WT 寡核苷酸转染后,无论是否用 erastin 处理,ATF4 mRNA 的水平都显著降低。同时,G 链突变在报告基因检测中有利于影响 ATF4 启动子下游的荧光素酶表达,表明内源性 G4 在 ATF4 启动子中的减少与 HepG2 细胞中 erastin 增强的表达呈正相关。

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