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通过使用标度方法提高磷核磁共振化学位移计算的准确性。

Improving the accuracy of P NMR chemical shift calculations by use of scaling methods.

作者信息

Hersh William H, Chan Tsz-Yeung

机构信息

Department of Chemistry and Biochemistry, Queens College, Queens, NY 11367-1597, USA.

Ph.D. Program in Chemistry, The Graduate Center of the City University of New York, New York, NY 10016, USA.

出版信息

Beilstein J Org Chem. 2023 Jan 10;19:36-56. doi: 10.3762/bjoc.19.4. eCollection 2023.

DOI:10.3762/bjoc.19.4
PMID:36726479
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9843238/
Abstract

Calculation of P NMR chemical shifts for a series of tri- and tetracoordinate phosphorus compounds using several basis sets and density functional theory (DFT) functionals gave a modest fit to experimental chemical shifts, but an excellent linear fit when plotted against the experimental values. The resultant scaling methods were then applied to a variety of "large" compounds previously selected by Latypov et al. and a set of stereoisomeric and unusual compounds selected here. No one method was best for all structural types. For compounds that contain P-P bonds and P-C multiple bonds, the Latypov et al. method using the PBE0 functional was best (mean absolute deviation/root mean square deviation (MAD/RMSD) = 6.9/8.5 ppm and 6.6/8.2 ppm, respectively), but for the full set of compounds gave higher deviations (MAD/RMSD = 8.2/12.3 ppm), and failed by over 60 ppm for a three-membered phosphorus heterocycle. Use of the M06-2X functional for both the structural optimization and NMR chemical shift calculation was best overall for the compounds without P-C multiple bonds (MAD/RMSD = 5.4/7.1 ppm), but failed by 30-49 ppm for compounds having any P-C multiple-bond character. Failures of these magnitudes have not been reported previously for these widely used functionals. These failures were then used to screen a variety of recommended functionals, leading to better overall methods for calculation of these chemical shifts: optimization with the M06-2X functional and NMR calculation with the PBE0 or ωB97x-D functionals gave values for MAD/RMSD = 6.9/8.5 ppm and 6.8/9.1 ppm, respectively, over an experimental chemical shift range of -181 to 356 ppm. Due to the unexplained failures observed, we recommend use of more than one method when looking at novel structures.

摘要

使用多种基组和密度泛函理论(DFT)泛函对一系列三配位和四配位磷化合物的³¹P NMR化学位移进行计算,结果与实验化学位移的拟合效果一般,但与实验值作图时呈现出出色的线性拟合。然后将所得的标度方法应用于Latypov等人先前选择的各种“大型”化合物以及此处选择的一组立体异构和特殊化合物。没有一种方法对所有结构类型都是最佳的。对于含有P-P键和P-C多重键的化合物,使用PBE0泛函的Latypov等人的方法是最佳的(平均绝对偏差/均方根偏差(MAD/RMSD)分别为6.9/8.5 ppm和6.6/8.2 ppm),但对于所有化合物组偏差更高(MAD/RMSD = 8.2/12.3 ppm),对于一个三元磷杂环,偏差超过60 ppm。对于没有P-C多重键的化合物,在结构优化和NMR化学位移计算中都使用M06-2X泛函总体上是最佳的(MAD/RMSD = 5.4/7.1 ppm),但对于具有任何P-C多重键特征的化合物,偏差为30 - 49 ppm。对于这些广泛使用的泛函,此前尚未报道过如此大的偏差。然后利用这些偏差来筛选各种推荐的泛函,从而得到计算这些化学位移的更好的总体方法:使用M06-2X泛函进行优化,使用PBE0或ωB97x-D泛函进行NMR计算,在-181至356 ppm的实验化学位移范围内,MAD/RMSD值分别为6.9/8.5 ppm和6.8/9.1 ppm。由于观察到无法解释的偏差,我们建议在研究新结构时使用不止一种方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/81df7bcc874e/Beilstein_J_Org_Chem-19-36-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/fc69ac837778/Beilstein_J_Org_Chem-19-36-g002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/645eaa8a3060/Beilstein_J_Org_Chem-19-36-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/74832e36c72e/Beilstein_J_Org_Chem-19-36-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/84a75fbd6957/Beilstein_J_Org_Chem-19-36-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/81df7bcc874e/Beilstein_J_Org_Chem-19-36-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/fc69ac837778/Beilstein_J_Org_Chem-19-36-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/bb50a9ade2f2/Beilstein_J_Org_Chem-19-36-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/ff212942e467/Beilstein_J_Org_Chem-19-36-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/6ab9bd7a65db/Beilstein_J_Org_Chem-19-36-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/645eaa8a3060/Beilstein_J_Org_Chem-19-36-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/74832e36c72e/Beilstein_J_Org_Chem-19-36-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/84a75fbd6957/Beilstein_J_Org_Chem-19-36-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c24/9843238/81df7bcc874e/Beilstein_J_Org_Chem-19-36-g009.jpg

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