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子宫内膜癌的代谢相关分子分类

Metabolism-associated molecular classification of endometrial carcinoma.

作者信息

Zhao Munan, Li Wei

机构信息

Stem Cell and Cancer Center, The First Hospital of Jilin University, Changchun, Jilin, China.

出版信息

Front Genet. 2023 Jan 16;14:955466. doi: 10.3389/fgene.2023.955466. eCollection 2023.

Abstract

endometrial carcinoma (UCEC) is one of the most common gynecologic malignancies. Currently, for UCEC cancer, molecular classification based on metabolic gene characteristics is rarely established. Here, we describe the molecular subtype features of UCEC by classifying metabolism-related gene profiles. Therefore, integrative analysis was performed on UCEC patients from the TCGA public database. Consensus clustering of RNA expression data on 2,752 previously reported metabolic genes identified two metabolic subtypes, namely, C1 and C2 subtypes. Two metabolic subtypes for prognostic characteristics, immune infiltration, genetic alteration, and responses to immunotherapy existed with distinct differences. Then, differentially expressed genes (DEGs) among the two metabolic subtypes were also clustered into two subclusters, and the aforementioned features were similar to the metabolic subtypes, supporting that the metabolism-relevant molecular classification is reliable. The results showed that the C1 subtype has high metabolic activity, high immunogenicity, high gene mutation, and a good prognosis. The C2 subtype has some features with low metabolic activity, low immunogenicity, high copy number variation (CNV) alteration, and poor prognosis. Finally, a model was identified, with three gene metabolism-related signatures, which can predict the prognosis. These findings of this study demonstrate a new classification in UCEC based on the metabolic pattern, thereby providing valuable information for understanding UCEC's molecular characteristics.

摘要

子宫内膜癌(UCEC)是最常见的妇科恶性肿瘤之一。目前,对于UCEC癌症,基于代谢基因特征的分子分类很少被建立。在此,我们通过对与代谢相关的基因谱进行分类来描述UCEC的分子亚型特征。因此,对来自TCGA公共数据库的UCEC患者进行了综合分析。对先前报道的2752个代谢基因的RNA表达数据进行一致性聚类,确定了两种代谢亚型,即C1和C2亚型。两种代谢亚型在预后特征、免疫浸润、基因改变和对免疫治疗的反应方面存在明显差异。然后,两种代谢亚型之间的差异表达基因(DEG)也被聚类为两个亚簇,并且上述特征与代谢亚型相似,支持与代谢相关的分子分类是可靠的。结果表明,C1亚型具有高代谢活性、高免疫原性、高基因突变和良好的预后。C2亚型具有一些低代谢活性、低免疫原性、高拷贝数变异(CNV)改变和预后不良的特征。最后,确定了一个具有三个与基因代谢相关特征的模型,该模型可以预测预后。本研究的这些发现展示了基于代谢模式的UCEC新分类,从而为理解UCEC的分子特征提供了有价值的信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba2c/9885131/3aa7dd71072b/fgene-14-955466-g001.jpg

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