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海鞘胚胎中的神经诱导模型。

Model of neural induction in the ascidian embryo.

机构信息

Unité de Chronobiologie Théorique, Faculté des Sciences, CP231, Université Libre de Bruxelles (ULB), Boulevard du Triomphe, Brussels, Belgium.

Applied Physics Research Group, Vrije Universiteit Brussel, Brussels, Belgium.

出版信息

PLoS Comput Biol. 2023 Feb 3;19(2):e1010335. doi: 10.1371/journal.pcbi.1010335. eCollection 2023 Feb.

Abstract

How cell specification can be controlled in a reproducible manner is a fundamental question in developmental biology. In ascidians, a group of invertebrate chordates, geometry plays a key role in achieving this control. Here, we use mathematical modeling to demonstrate that geometry dictates the neural-epidermal cell fate choice in the 32-cell stage ascidian embryo by a two-step process involving first the modulation of ERK signaling and second, the expression of the neural marker gene, Otx. The model describes signal transduction by the ERK pathway that is stimulated by FGF and attenuated by ephrin, and ERK-mediated control of Otx gene expression, which involves both an activator and a repressor of ETS-family transcription factors. Considering the measured area of cell surface contacts with FGF- or ephrin-expressing cells as inputs, the solutions of the model reproduce the experimental observations about ERK activation and Otx expression in the different cells under normal and perturbed conditions. Sensitivity analyses and computations of Hill coefficients allow us to quantify the robustness of the specification mechanism controlled by cell surface area and to identify the respective role played by each signaling input. Simulations also predict in which conditions the dual control of gene expression by an activator and a repressor that are both under the control of ERK can induce a robust ON/OFF control of neural fate induction.

摘要

细胞如何在可重复的方式下特化是发育生物学的一个基本问题。在海鞘中,作为无脊椎脊索动物的一个群组,几何形状在实现这种控制中起着关键作用。在这里,我们使用数学模型来证明,几何形状通过涉及ERK 信号调制和其次是神经标记基因 Otx 表达的两步过程来决定 32 细胞阶段海鞘胚胎的神经-表皮细胞命运选择。该模型描述了由 FGF 刺激和 Ephrin 衰减的 ERK 途径信号转导,以及 ERK 介导的 Otx 基因表达的控制,其涉及 ETS 家族转录因子的激活子和抑制剂。考虑到细胞表面与表达 FGF 或 Ephrin 的细胞接触的测量面积作为输入,模型的解再现了正常和扰动条件下不同细胞中关于 ERK 激活和 Otx 表达的实验观察。敏感性分析和 Hill 系数的计算使我们能够量化由细胞表面积控制的特化机制的稳健性,并确定每个信号输入的各自作用。模拟还预测了在何种条件下,由 ERK 控制的激活子和抑制剂对基因表达的双重控制可以诱导神经命运诱导的稳健 ON/OFF 控制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb36/9931142/f64a689ef7ba/pcbi.1010335.g001.jpg

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