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比色法检测DNA测序

Colorimetric-detected DNA sequencing.

作者信息

Beck S

机构信息

Medical Research Council, Laboratory of Molecular Biology, Cambridge, England.

出版信息

Anal Biochem. 1987 Aug 1;164(2):514-20. doi: 10.1016/0003-2697(87)90526-4.

DOI:10.1016/0003-2697(87)90526-4
PMID:3674397
Abstract

A sensitive, colorimetric method for visualizing the band pattern of DNA sequencing reaction is described. The enzymatic incorporation of radioactive nucleotides commonly used for the band detection is replaced by biotin conjugated to the 5'-terminus of a synthetic oligonucleotide by chemical synthesis. The oligonucleotide so labeled is used as a primer for dideoxy DNA sequencing in a primer extension reaction. The products of the sequencing reactions are analyzed on a denaturing polyacrylamide gel using the direct blotting electrophoresis technique. This technique makes it possible to transfer the band pattern during the electrophoresis onto an immobilizing matrix, on which it is made visible by an enzymatic reaction in less than 3 h. This biotin-based detection method is so sensitive that the sequencing reactions can be performed under the same conditions and concentrations as those for the radioactive detection.

摘要

本文描述了一种灵敏的比色法,用于可视化DNA测序反应的条带模式。用于条带检测的常用放射性核苷酸的酶促掺入被通过化学合成与合成寡核苷酸5'端共轭的生物素所取代。如此标记的寡核苷酸在引物延伸反应中用作双脱氧DNA测序的引物。使用直接印迹电泳技术在变性聚丙烯酰胺凝胶上分析测序反应的产物。该技术使得在电泳过程中将条带模式转移到固定基质上成为可能,在该基质上通过酶促反应在不到3小时内使其可见。这种基于生物素的检测方法非常灵敏,以至于测序反应可以在与放射性检测相同的条件和浓度下进行。

相似文献

1
Colorimetric-detected DNA sequencing.比色法检测DNA测序
Anal Biochem. 1987 Aug 1;164(2):514-20. doi: 10.1016/0003-2697(87)90526-4.
2
Non-radioactive chemical sequencing of biotin labelled DNA.生物素标记DNA的非放射性化学测序
Nucleic Acids Res. 1989 Mar 25;17(6):2181-6. doi: 10.1093/nar/17.6.2181.
3
DNA sequencing with direct blotting electrophoresis and colorimetric detection.采用直接印迹电泳和比色检测的DNA测序法。
Biotechniques. 1989 Jan;7(1):52-9.
4
A new solid-phase chemical DNA sequencing method which uses streptavidin-coated magnetic beads.一种使用链霉亲和素包被磁珠的新型固相化学DNA测序方法。
DNA Res. 1995 Jun 30;2(3):123-8. doi: 10.1093/dnares/2.3.123.
5
Solid-phase method for the purification of DNA sequencing reactions.用于纯化DNA测序反应的固相方法。
Anal Chem. 1992 Nov 15;64(22):2672-7. doi: 10.1021/ac00046a004.
6
Dideoxy DNA sequencing with chemiluminescent detection.采用化学发光检测的双脱氧DNA测序法。
Curr Protoc Mol Biol. 2001 May;Chapter 7:Unit7.4B. doi: 10.1002/0471142727.mb0704bs47.
7
Fast, manual, nonradioactive method for DNA sequencing.用于DNA测序的快速、手动、非放射性方法。
Clin Chem. 1993 Aug;39(8):1682-5.
8
Colorimetric detection of DNA polymerase activity after sodium dodecyl sulfate polyacrylamide gel electrophoresis.十二烷基硫酸钠聚丙烯酰胺凝胶电泳后DNA聚合酶活性的比色检测
Anal Biochem. 1994 Aug 15;221(1):57-60. doi: 10.1006/abio.1994.1378.
9
DNA sequencing by the dideoxy method.双脱氧法DNA测序
Curr Protoc Mol Biol. 2001 May;Chapter 7:Unit7.4A. doi: 10.1002/0471142727.mb0704as47.
10
General colorimetric method for DNA diagnostics allowing direct solid-phase genomic sequencing of the positive samples.用于DNA诊断的通用比色法,可对阳性样本进行直接固相基因组测序。
Proc Natl Acad Sci U S A. 1990 Sep;87(17):6569-73. doi: 10.1073/pnas.87.17.6569.

引用本文的文献

1
Solid phase DNA sequencing using the biotin-avidin system.使用生物素-抗生物素蛋白系统的固相DNA测序
Nucleic Acids Res. 1988 Apr 11;16(7):3025-38. doi: 10.1093/nar/16.7.3025.
2
Identification of enterotoxigenic Escherichia coli using alkaline phosphatase-labeled synthetic oligodeoxyribonucleotide probes.使用碱性磷酸酶标记的合成寡脱氧核糖核苷酸探针鉴定产肠毒素大肠杆菌
Eur J Clin Microbiol Infect Dis. 1988 Apr;7(2):167-71. doi: 10.1007/BF01963071.
3
Chemiluminescent detection of DNA: application for DNA sequencing and hybridization.
DNA的化学发光检测:在DNA测序和杂交中的应用。
Nucleic Acids Res. 1989 Jul 11;17(13):5115-23. doi: 10.1093/nar/17.13.5115.
4
Non-radioactive chemical sequencing of biotin labelled DNA.生物素标记DNA的非放射性化学测序
Nucleic Acids Res. 1989 Mar 25;17(6):2181-6. doi: 10.1093/nar/17.6.2181.
5
Imaging of DNA sequences with chemiluminescence.利用化学发光对DNA序列进行成像。
Proc Natl Acad Sci U S A. 1990 Jun;87(12):4514-8. doi: 10.1073/pnas.87.12.4514.
6
Digital chemiluminescence imaging of DNA sequencing blots using a charge-coupled device camera.使用电荷耦合器件相机对DNA测序印迹进行数字化学发光成像。
Nucleic Acids Res. 1992 Dec 25;20(24):6657-65. doi: 10.1093/nar/20.24.6657.