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单细胞转录组学谱系追踪解析谱系承诺的动态。

Lineage Tracing by Single-Cell Transcriptomics Decoding Dynamics of Lineage Commitment.

机构信息

Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China.

出版信息

Methods Mol Biol. 2024;2736:1-7. doi: 10.1007/7651_2022_476.

Abstract

Tracing the fate of individual cells and their progeny is necessary and significant for stem cell research and cancer research. Changes in lineage-specific transcription factor levels during lineage commitment are gradual and continuous. Development of single-cell sequencing technology allows many different states of cells to be sequenced at an unprecedented resolution, and it has been proved that single-cell transcriptomics meets lineage tracing. Here, we introduce a detailed protocol for the lineage tracing by single-cell transcriptomics to clarify the dynamics of lineage commitment.

摘要

追踪单个细胞及其后代的命运对于干细胞研究和癌症研究是必要且重要的。谱系特异性转录因子水平在谱系决定过程中的变化是逐渐且连续的。单细胞测序技术的发展使得可以以前所未有的分辨率对许多不同状态的细胞进行测序,并且已经证明单细胞转录组学符合谱系追踪。在这里,我们介绍了一种通过单细胞转录组学进行谱系追踪的详细方案,以阐明谱系决定的动态。

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