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(硬骨鱼纲,鲤形目,鲤科)线粒体基因组全序列的组装及系统发育分析

Assembly and phylogenetic analysis of the complete mitogenome of (Teleostei, Cypriniformes, Danionidae).

作者信息

Chen Xiao Jiang, Liu Wen Zhao, Song Lin, Liu Hai Xia

机构信息

College of Fisheries Science and Technology, Jiangsu Agri-Animal Husbandry Vocational College, Taizhou City, Jiangsu Province, P. R. China.

College of Fisheries and Life Science, Dalian Ocean University, Dalian City, Liaoning Province, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2023 Feb 3;8(2):187-191. doi: 10.1080/23802359.2022.2151831. eCollection 2023.

DOI:10.1080/23802359.2022.2151831
PMID:36755879
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9901436/
Abstract

The complete mitochondrial DNA genome of interruptus was sequenced on the Illumina HiSeq platform and found to be 16,735 bp and included 37 genes encoding 13 proteins, 22 tRNAs, two rRNAs, and two non-coding regions. The proportion of nucleotides in mitochondrial genome was T (27.9%), C (23.7%), A (33%), G (15.4%), and the deviation of AT was 60.9%. A Maximum-Likelihood phylogenetic tree was reconstructed using the concatenated mitochondrial protein-coding genes of and other 18 species of fishes. Phylogenetic analysis results supported that was closely related to . Fundamental genetic data of will be essential for further genetic studies.

摘要

对中断种的完整线粒体DNA基因组在Illumina HiSeq平台上进行了测序,发现其长度为16,735碱基对,包含37个基因,编码13种蛋白质、22个tRNA、2个rRNA和2个非编码区。线粒体基因组中核苷酸的比例为T(27.9%)、C(23.7%)、A(33%)、G(15.4%),AT偏差为60.9%。使用中断种和其他18种鱼类的串联线粒体蛋白质编码基因重建了最大似然系统发育树。系统发育分析结果支持中断种与[某物种]密切相关。中断种的基础遗传数据对于进一步的遗传研究至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2501/9901436/045de9e35a71/TMDN_A_2151831_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2501/9901436/74fb1f81c8be/TMDN_A_2151831_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2501/9901436/d3e586f9d9e2/TMDN_A_2151831_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2501/9901436/045de9e35a71/TMDN_A_2151831_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2501/9901436/74fb1f81c8be/TMDN_A_2151831_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2501/9901436/d3e586f9d9e2/TMDN_A_2151831_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2501/9901436/045de9e35a71/TMDN_A_2151831_F0003_B.jpg

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