School of Life Sciences, Guizhou Normal University, Gui'an, Guizhou, China.
PLoS One. 2023 Feb 10;18(2):e0281597. doi: 10.1371/journal.pone.0281597. eCollection 2023.
Notobitus montanus Hsiao, 1963 is a major pest of bamboos. The mitogenome of N. montanus (ON052831) was decoded using next-generation sequencing. The mitogenome, with 42.26% A, 30.54% T, 16.54% C, and 10.65% G, is 16,209 bp in size. Codon usage analysis indicated that high frequently used codons used either A or T at the third position of the codon. Amino acid usage analysis showed that leucine 2, phenylalanine, isoleucine and tyrosine were the most abundant in 31 Coreoidea species. Thirteen protein-coding genes (PCGs) were evolving under purifying selection, nad5 and cox1 had the lowest and strongest purifying selection stress, respectively. Correlation analysis showed that evolutionary rate had positive correlation with A+T content. No tandem repeat was detected in the non-coding region of N. montanus. The phylogenetic tree showed that Alydidae and Coreidae were not monophyletic. However, the topology of phylogenetic trees, based on 13 PCGs, was in accordance with that of tree based on both mitochondrial and nuclear genes but not ultraconserved element loci or combination of 13 PCGs and two rRNAs. It seems that their relationships are complex, which need revaluation and revision. The mitogenomic information of N. montanus could shed light on the evolution of Coreoidea.
Notobitus montanus Hsiao, 1963 是一种主要的竹子害虫。使用下一代测序技术对 N. montanus(ON052831)的线粒体基因组进行了解码。线粒体基因组大小为 16,209 bp,A 含量为 42.26%,T 含量为 30.54%,C 含量为 16.54%,G 含量为 10.65%。密码子使用分析表明,高频率使用的密码子在密码子的第三位使用 A 或 T。氨基酸使用分析表明,亮氨酸 2、苯丙氨酸、异亮氨酸和酪氨酸在 31 种 Coreoidea 物种中最为丰富。13 个蛋白质编码基因(PCGs)在纯化选择下进化,nad5 和 cox1 分别具有最低和最强的纯化选择压力。相关性分析表明,进化率与 A+T 含量呈正相关。在 N. montanus 的非编码区未检测到串联重复。系统发育树显示 Alydidae 和 Coreidae 不是单系的。然而,基于 13 个 PCGs 的系统发育树的拓扑结构与基于线粒体和核基因的系统发育树的拓扑结构一致,但与超保守元件位点或 13 个 PCGs 和两个 rRNAs 的组合不一致。似乎它们的关系很复杂,需要重新评估和修正。N. montanus 的线粒体基因组信息可以为 Coreoidea 的进化提供线索。