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(半翅目,长蝽科)线粒体全基因组特征及其在系统发育分析中的意义

Characterization of the complete mitochondrial genome of (Heteroptera, Rhopalidae) and its implication for phylogenetic analyses.

作者信息

Zhao Wanqing, Liu Dajun, Jia Qian, Wu Xin, Zhang Hufang

机构信息

Department of Biology, Xinzhou Teachers University, Xinzhou 034000, Shanxi, China Xinzhou Teachers University Xinzhou China.

出版信息

Zookeys. 2021 Nov 10;1070:13-30. doi: 10.3897/zookeys.1070.72742. eCollection 2021.

Abstract

Mitochondrial genomes (mitogenomes) are widely used in research studies on phylogenetic relationships and evolutionary history. Here, we sequenced and analyzed the mitogenome of the scentless plant bug Hsiao, 1964 (Heteroptera, Rhopalidae). The complete 17,309 bp genome encoded 37 genes, including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a control region. The mitogenome revealed a high A+T content (75.8%), a positive AT-skew (0.092), and a negative GC-skew (-0.165). All 13 PCGs were found to start with ATN codons, except for , in which TTG was the start codon. The Ka/Ks ratios of 13 PCGs were all lower than 1, indicating that purifying selection evolved in these genes. All tRNAs could be folded into the typical cloverleaf secondary structure, except for and , which lack dihydrouridine arms. Phylogenetic trees were constructed and analyzed based on the PCG+rRNA from 38 mitogenomes, using maximum likelihood and Bayesian inference methods, showed that and Stål, 1858 grouped together in the tribe Chorosomatini. In addition, Coreoidea and Pyrrhocoroidea were sister groups among the superfamilies of Trichophora, and Rhopalidae was a sister group to Alydidae + Coreidae.

摘要

线粒体基因组(mitogenomes)被广泛应用于系统发育关系和进化历史的研究中。在此,我们对无香蝽(Hsiao,1964)(半翅目,缘蝽科)的线粒体基因组进行了测序和分析。完整的17309 bp基因组编码37个基因,包括13个蛋白质编码基因(PCGs)、22个转运RNA(tRNA)基因、2个核糖体RNA(rRNA)基因和一个控制区。线粒体基因组显示出较高的A+T含量(75.8%)、正的AT偏斜(0.092)和负的GC偏斜(-0.165)。发现所有13个PCGs均以ATN密码子起始,但 除外,其起始密码子为TTG。13个PCGs的Ka/Ks比值均低于1,表明这些基因受到纯化选择。除 和 缺少二氢尿嘧啶臂外,所有tRNA均可折叠成典型的三叶草二级结构。基于38个线粒体基因组的PCG+rRNA构建并分析了系统发育树,使用最大似然法和贝叶斯推断法,结果表明 和 (Stål,1858)在Chorosomatini族中聚在一起。此外,在Trichophora总科中,Coreoidea和Pyrrhocoroidea是姐妹群,而缘蝽科是Alydidae + Coreidae的姐妹群。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a678/8599289/3c743e4168e8/zookeys-1070-013-g001.jpg

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