Hope Ian, Endicott Jane A, Watt Jessica E
Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Paul O'Gorman Building, Framlington Place Newcastle upon Tyne NE2 4HH UK
RSC Chem Biol. 2022 Dec 14;4(2):146-164. doi: 10.1039/d2cb00201a. eCollection 2023 Feb 8.
Aberrant activity of the cyclin-dependent kinase family is frequently noted in a number of diseases identifying them as potential targets for drug development. However, current CDK inhibitors lack specificity owing to the high sequence and structural conservation of the ATP binding cleft across family members, highlighting the necessity of finding novel modes of CDK inhibition. The wealth of structural information regarding CDK assemblies and inhibitor complexes derived from X-ray crystallographic studies has been recently complemented through the use of cryo-electron microscopy. These recent advances have provided insights into the functional roles and regulatory mechanisms of CDKs and their interaction partners. This review explores the conformational malleability of the CDK subunit, the importance of SLiM recognition sites in CDK complexes, the progress made in chemically induced CDK degradation and how these studies can contribute to CDK inhibitor design. Additionally, fragment-based drug discovery can be utilised to identify small molecules that bind to allosteric sites on the CDK surface employing interactions which mimic those of native protein-protein interactions. These recent structural advances in CDK inhibitor mechanisms and in chemical probes which do not occupy the orthosteric ATP binding site can provide important insights for targeted CDK therapies.
细胞周期蛋白依赖性激酶家族的异常活性在多种疾病中经常被发现,这表明它们是药物开发的潜在靶点。然而,由于家族成员间ATP结合裂隙的高度序列和结构保守性,目前的CDK抑制剂缺乏特异性,这凸显了寻找新型CDK抑制模式的必要性。最近,通过使用冷冻电子显微镜,补充了源自X射线晶体学研究的关于CDK组装体和抑制剂复合物的大量结构信息。这些最新进展为CDK及其相互作用伙伴的功能作用和调控机制提供了深入了解。本综述探讨了CDK亚基的构象可塑性、CDK复合物中短线性基序识别位点的重要性、化学诱导CDK降解方面取得的进展以及这些研究如何有助于CDK抑制剂的设计。此外,基于片段的药物发现可用于识别与CDK表面变构位点结合的小分子,这些小分子利用模仿天然蛋白质-蛋白质相互作用的相互作用。CDK抑制剂机制以及不占据正构ATP结合位点的化学探针方面的这些最新结构进展可为靶向CDK治疗提供重要见解。