Li Bai-Jun, Shi Yan-Na, Jia Hao-Ran, Yang Xiao-Fang, Sun Yun-Fan, Lu Jiao, Giovannoni James J, Jiang Gui-Hua, Rose Jocelyn K C, Chen Kun-Song
College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou, China.
Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou, China.
Front Plant Sci. 2023 Jan 30;14:1117156. doi: 10.3389/fpls.2023.1117156. eCollection 2023.
As a canonical non-climacteric fruit, strawberry ( spp.) ripening is mainly mediated by abscisic acid (ABA), which involves multiple other phytohormone signalings. Many details of these complex associations are not well understood. We present an coexpression network, involving ABA and other phytohormone signalings, based on weighted gene coexpression network analysis of spatiotemporally resolved transcriptome data and phenotypic changes of strawberry receptacles during development and following various treatments. This coexpression network consists of 18,998 transcripts and includes transcripts related to phytohormone signaling pathways, MADS and NAC family transcription factors and biosynthetic pathways associated with fruit quality. Members of eight phytohormone signaling pathways are predicted to participate in ripening and fruit quality attributes mediated by ABA, of which 43 transcripts were screened to consist of the hub phytohormone signalings. In addition to using several genes reported from previous studies to verify the reliability and accuracy of this network, we explored the role of two hub signalings, small auxin up-regulated RNA 1 and 2 in receptacle ripening mediated by ABA, which are also predicted to contribute to fruit quality. These results and publicly accessible datasets provide a valuable resource to elucidate ripening and quality formation mediated by ABA and involves multiple other phytohormone signalings in strawberry receptacle and serve as a model for other non-climacteric fruits.
作为典型的非跃变型果实,草莓( spp.)的成熟主要由脱落酸(ABA)介导,这涉及多种其他植物激素信号传导。这些复杂关联的许多细节尚未得到充分理解。基于对草莓花托在发育过程中和经过各种处理后的时空分辨转录组数据和表型变化进行加权基因共表达网络分析,我们构建了一个涉及ABA和其他植物激素信号传导的共表达网络。这个共表达网络由18998个转录本组成,包括与植物激素信号通路、MADS和NAC家族转录因子以及与果实品质相关的生物合成途径相关的转录本。预测八个植物激素信号通路的成员参与由ABA介导的成熟和果实品质属性,其中筛选出43个转录本组成核心植物激素信号传导。除了使用先前研究报道的几个基因来验证该网络的可靠性和准确性外,我们还探讨了两个核心信号传导,即小生长素上调RNA 1和2在ABA介导的花托成熟中的作用,它们也被预测对果实品质有贡献。这些结果和公开可用的数据集为阐明ABA介导的成熟和品质形成提供了宝贵资源,涉及草莓花托中的多种其他植物激素信号传导,并为其他非跃变型果实提供了一个模型。