黏附素家族在病原性酵母菌中的平行扩张和分歧。

Parallel expansion and divergence of an adhesin family in pathogenic yeasts.

机构信息

Civil and Environmental Engineering, The University of Iowa, Iowa City, IA 52242, USA.

Interdisciplinary Graduate Program in Genetics, The University of Iowa, Iowa City, IA 52242, USA.

出版信息

Genetics. 2023 Apr 6;223(4). doi: 10.1093/genetics/iyad024.

Abstract

Opportunistic yeast pathogens arose multiple times in the Saccharomycetes class, including the recently emerged, multidrug-resistant (MDR) Candida auris. We show that homologs of a known yeast adhesin family in Candida albicans, the Hyr/Iff-like (Hil) family, are enriched in distinct clades of Candida species as a result of multiple, independent expansions. Following gene duplication, the tandem repeat-rich region in these proteins diverged extremely rapidly and generated large variations in length and β-aggregation potential, both of which are known to directly affect adhesion. The conserved N-terminal effector domain was predicted to adopt a β-helical fold followed by an α-crystallin domain, making it structurally similar to a group of unrelated bacterial adhesins. Evolutionary analyses of the effector domain in C. auris revealed relaxed selective constraint combined with signatures of positive selection, suggesting functional diversification after gene duplication. Lastly, we found the Hil family genes to be enriched at chromosomal ends, which likely contributed to their expansion via ectopic recombination and break-induced replication. Combined, these results suggest that the expansion and diversification of adhesin families generate variation in adhesion and virulence within and between species and are a key step toward the emergence of fungal pathogens.

摘要

机会性酵母病原体在酿酒酵母目中多次出现,包括最近出现的多药耐药(MDR)念珠菌属。我们表明,白念珠菌中已知的酵母黏附素家族的同源物,Hyr/Iff 样(Hil)家族,由于多次独立扩张,在不同的念珠菌物种分支中富集。在基因复制后,这些蛋白质中的串联重复丰富区域迅速分化,导致长度和β-聚集潜力的巨大变化,这两者都被认为直接影响黏附。保守的 N 端效应子结构域被预测采用β-螺旋折叠,随后是α-晶状体结构域,使其在结构上类似于一组不相关的细菌黏附素。对 C. auris 效应子结构域的进化分析表明,选择压力放松,加上正选择的特征,表明基因复制后功能多样化。最后,我们发现 Hil 家族基因在染色体末端富集,这可能通过异位重组和断裂诱导复制促进了它们的扩张。综上所述,黏附素家族的扩张和多样化在种内和种间产生了黏附和毒力的变异,是真菌病原体出现的关键步骤。

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