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人工智能辅助药物重用以治疗意义未明的单克隆丙种球蛋白病的筛选策略。

Artificial intelligence-enabled screening strategy for drug repurposing in monoclonal gammopathy of undetermined significance.

机构信息

Division of Hospital Internal Medicine, Mayo Clinic, Rochester, MN, USA.

Division of Hematology, Mayo Clinic, Rochester, MN, USA.

出版信息

Blood Cancer J. 2023 Feb 17;13(1):28. doi: 10.1038/s41408-023-00798-7.

DOI:10.1038/s41408-023-00798-7
PMID:36797276
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9935510/
Abstract

Monoclonal gammopathy of undetermined significance (MGUS) is a benign hematological condition with the potential to progress to malignant conditions including multiple myeloma and Waldenstrom macroglobulinemia. Medications that modify progression risk have yet to be identified. To investigate, we leveraged machine-learning and electronic health record (EHR) data to screen for drug repurposing candidates. We extracted clinical and laboratory data from a manually curated MGUS database, containing 16,752 MGUS patients diagnosed from January 1, 2000 through December 31, 2021, prospectively maintained at Mayo Clinic. We merged this with comorbidity and medication data from the EHR. Medications were mapped to 21 drug classes of interest. The XGBoost module was then used to train a primary Cox survival model; sensitivity analyses were also performed limiting the study group to those with non-IgM MGUS and those with M-spikes >0.3 g/dl. The impact of explanatory features was quantified as hazard ratios after generating distributions using bootstrapping. Medication data were available for 12,253 patients; those without medications data were excluded. Our model achieved a good fit of the data with inverse probability of censoring weights concordance index of 0.883. The presence of multivitamins, immunosuppression, non-coronary NSAIDS, proton pump inhibitors, vitamin D supplementation, opioids, statins and beta-blockers were associated with significantly lower hazard ratio for MGUS progression in our primary model; multivitamins and non-coronary NSAIDs remained significant across both sensitivity analyses. This work could inform subsequent prospective studies, or similar studies in other disease states.

摘要

意义未明的单克隆丙种球蛋白血症(MGUS)是一种良性血液学疾病,有进展为多发性骨髓瘤和华氏巨球蛋白血症等恶性疾病的潜在风险。目前尚未发现可改变进展风险的药物。为了进行研究,我们利用机器学习和电子健康记录(EHR)数据来筛选药物再利用的候选药物。我们从 Mayo 诊所前瞻性维护的一个手工 curated 的 MGUS 数据库中提取了临床和实验室数据,该数据库包含了 16752 例从 2000 年 1 月 1 日至 2021 年 12 月 31 日诊断为 MGUS 的患者。我们将其与 EHR 中的合并症和用药数据合并。将药物映射到 21 种感兴趣的药物类别。然后,使用 XGBoost 模块训练一个主要的 Cox 生存模型;还进行了敏感性分析,将研究组限制为非 IgM MGUS 患者和 M 峰>0.3g/dl 的患者。使用 bootstrap 生成分布后,将解释性特征的影响量化为危害比。共有 12253 名患者有用药数据;没有用药数据的患者被排除在外。我们的模型对数据有很好的拟合,逆概率校正权重一致性指数为 0.883。在我们的主要模型中,复合维生素、免疫抑制、非冠状动脉 NSAIDs、质子泵抑制剂、维生素 D 补充剂、阿片类药物、他汀类药物和β受体阻滞剂的存在与 MGUS 进展的风险比显著降低相关;在两种敏感性分析中,复合维生素和非冠状动脉 NSAIDs 仍然具有统计学意义。这项工作可以为随后的前瞻性研究或其他疾病状态的类似研究提供信息。