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DRBD18介导的翻译调控有助于维持前循环状态。

Translational control by DRBD18 contributes to the maintenance of the procyclic state.

作者信息

Ciganda Martin, Sotelo-Silveira Jos, Smith Joseph T, Shen Shichen, Qu Jun, Smircich Pablo, Read Laurie K

出版信息

bioRxiv. 2023 Feb 10:2023.02.08.527724. doi: 10.1101/2023.02.08.527724.

Abstract

occupies distinct niches throughout its life cycle, within both the mammalian and tsetse fly hosts. The immunological and biochemical complexity and variability of each of these environments require a reshaping of the protein landscape of the parasite both to evade surveillance and face changing metabolic demands. Whereas most well-studied organisms rely on transcriptional control as the main regulator of gene expression, post-transcriptional control mechanisms are particularly important in , and these are often mediated by RNA-binding proteins. DRBD18 is a RNA-binding protein that interacts with ribosomal proteins and translation factors. Here, we tested a role for DRBD18 in translational control. We show that DRBD18 depletion by RNA interference leads to altered polysomal profiles with a specific depletion of heavy polysomes. Ribosome profiling analysis reveals that 101 transcripts change in translational efficiency (TE) upon DRBD18 depletion: 41 exhibit decreased TE and 60 exhibit increased TE. A further 66 transcripts are buffered, . changes in transcript abundance are compensated by changes in TE such that the total translational output is expected not to change. Proteomic analysis validates these data. In DRBD18-depleted cells, a cohort of transcripts that codes for procyclic form-specific proteins is translationally repressed while, conversely, transcripts that code for bloodstream form- and metacyclic form-specific proteins are translationally enhanced. These data suggest that DRBD18 contributes to the maintenance of the procyclic state through both positive and negative translational control of specific mRNAs.

摘要

在其整个生命周期中,它在哺乳动物宿主和采采蝇宿主内占据不同的生态位。这些环境中每一个的免疫和生化复杂性及变异性都要求寄生虫重塑蛋白质格局,以逃避监测并应对不断变化的代谢需求。虽然大多数深入研究的生物体依赖转录控制作为基因表达的主要调节因子,但转录后控制机制在[此处缺失相关内容]中尤为重要,并且这些机制通常由RNA结合蛋白介导。DRBD18是一种与核糖体蛋白和翻译因子相互作用的RNA结合蛋白。在这里,我们测试了DRBD18在翻译控制中的作用。我们表明,通过RNA干扰耗尽DRBD18会导致多核糖体谱改变,重多核糖体特异性耗尽。核糖体分析揭示,在耗尽DRBD18后,101个转录本的翻译效率(TE)发生变化:41个TE降低,60个TE升高。另外66个转录本受到缓冲,[此处缺失相关内容]。转录本丰度的变化通过TE的变化得到补偿,因此预期总翻译输出不会改变。蛋白质组学分析验证了这些数据。在耗尽DRBD18的细胞中,一组编码前循环形式特异性蛋白的转录本被翻译抑制,而相反,编码血流形式和循环后期形式特异性蛋白的转录本被翻译增强。这些数据表明,DRBD18通过对特定mRNA的正负翻译控制,有助于维持前循环状态。

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