Department of Pharmacology, All India Institute of Medical Sciences (AIIMS), Raipur, Chhattisgarh, 492099, India.
Department of Pharmacology, All India Institute of Medical Sciences, Deoghar, India.
Recent Adv Antiinfect Drug Discov. 2023;18(3):170-177. doi: 10.2174/2772434418666230220123217.
Since leprosy bacilli cannot grow in vitro, testing for antimicrobial resistance against Mycobacterium leprae or assessing the anti-leprosy activity of new drugs remains hard. Furthermore, developing a new leprosy drug through the traditional drug development process is not economically captivating for pharmaceutical companies. As a result, repurposing existing drugs/approved medications or their derivatives to test their anti-leprotic potency is a promising alternative. It is an accelerated method to uncover different medicinal and therapeutic properties in approved drug molecules.
The study aims to explore the binding potential of anti-viral drugs such as Tenofovir, Emtricitabine, and Lamivudine (TEL) against using molecular docking.
The current study evaluated and confirmed the possibility of repurposing antiviral drugs such as TEL (Tenofovir, Emtricitabine, and Lamivudine) by transferring the graphical window of the BIOVIA DS2017 with the Crystal Structure of a phosphoglycerate mutase gpm1 from (PDB ID: 4EO9). Utilizing the smart minimizer algorithm, the protein's energy was reduced in order to achieve a stable local minima conformation.
The protein and molecule energy minimization protocol generated stable configuration energy molecules. The protein 4EO9 energy was reduced from 14264.5 kcal/mol to -17588.1 kcal/mol.
The CHARMm algorithm-based CDOCKER run docked all three molecules (TEL) inside the 4EO9 protein binding pocket (). The interaction analysis revealed that tenofovir had a better binding molecule with a score of - 37.7297 kcal/mol than the other molecules.
由于麻风杆菌不能在体外生长,因此测试抗麻风分枝杆菌的抗菌药物耐药性或评估新药物的抗麻风活性仍然很困难。此外,通过传统的药物开发过程开发新的麻风病药物对制药公司来说没有经济吸引力。因此,重新利用现有的药物/已批准的药物或其衍生物来测试其抗麻风病活性是一种很有前途的替代方法。这是一种快速揭示已批准药物分子中不同药用和治疗特性的方法。
本研究旨在通过分子对接探索抗病毒药物如替诺福韦、恩曲他滨和拉米夫定(TEL)对麻风分枝杆菌的结合潜力。
本研究通过将 BIOVIA DS2017 的图形窗口转移到 4EO9 中的磷酸甘油酸变位酶 gpm1 的晶体结构上来评估和确认抗病毒药物如 TEL(替诺福韦、恩曲他滨和拉米夫定)的再利用可能性(PDB ID:4EO9)。利用智能最小化算法,降低蛋白质的能量,以达到稳定的局部最小构象。
蛋白质和分子能量最小化方案生成了稳定的构象能量分子。蛋白 4EO9 的能量从 14264.5 kcal/mol 降低到-17588.1 kcal/mol。
基于 CHARMm 算法的 CDOCKER 运行将三种分子(TEL)都对接在 4EO9 蛋白结合口袋()内。相互作用分析表明,替诺福韦与其他两种分子相比,具有更好的结合分子,其得分-37.7297 kcal/mol。