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柑橘黄龙病病原菌载体中的基因注释。

Annotation of genes in , the vector for Huanglongbing disease.

作者信息

Massimino Crissy, Vosburg Chad, Shippy Teresa, Hosmani Prashant S, Flores-Gonzalez Mirella, Mueller Lukas A, Hunter Wayne B, Benoit Joshua B, Brown Susan J, D'Elia Tom, Saha Surya

机构信息

Indian River State College, Fort Pierce, FL 34981, USA.

Division of Biology, Kansas State University, Manhattan, KS 66506, USA.

出版信息

GigaByte. 2021 May 24;2021:gigabyte20. doi: 10.46471/gigabyte.20. eCollection 2021.

Abstract

Huanglongbing (HLB), also known as citrus greening disease, is caused by the bacterium Liberibacter asiaticus (Las). It is a serious threat to global citrus production. This bacterium is transmitted by the Asian citrus psyllid, (Hemiptera). There are no effective treatments for Las. Therefore, one strategy is to manage the psyllid population. Manual annotation of the genome can identify and characterize gene families that could be novel targets for psyllid control. The gene family is an excellent target because genes, which have roles in melanization, are linked to development and immunity. Combined analysis of the genome with RNA-seq datasets, sequence homology, and phylogenetic trees were used to identify and annotate nine genes in the genome. Manual curation of genes in provided in-depth analysis of the family among hemipteran insects and provides new targets for molecular control of this psyllid pest. Manual annotation was done as part of a collaborative Citrus Greening community annotation project.

摘要

黄龙病(HLB),又称柑橘黄龙病,由亚洲韧皮杆菌(Las)引起。它对全球柑橘生产构成严重威胁。这种细菌由亚洲柑橘木虱(半翅目)传播。目前尚无针对亚洲韧皮杆菌的有效治疗方法。因此,一种策略是控制木虱种群数量。对基因组进行人工注释可以识别和表征可能成为控制木虱新靶点的基因家族。该基因家族是一个极佳的靶点,因为参与黑化作用的基因与发育和免疫相关。将基因组与RNA测序数据集、序列同源性及系统发育树进行综合分析,以识别和注释该基因组中的9个基因。对该基因组中的基因进行人工整理,深入分析了半翅目昆虫中的该基因家族,并为这种木虱害虫的分子防治提供了新靶点。人工注释是柑橘黄龙病社区协作注释项目的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d16/9631960/a6193775d04e/gigabyte-2021-20-g001.jpg

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