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基因家族的基因结构特异性与表达。

Gene Structural Specificity and Expression of Gene Family in .

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology Ministry of Education, Nanjing Forestry University, Nanjing 210037, China.

Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China.

出版信息

Int J Mol Sci. 2023 Feb 8;24(4):3434. doi: 10.3390/ijms24043434.

Abstract

genes encode transcription factors that affect plant growth and development. is an oil tree species with ornamental value, but there have been few molecular biological studies on the developmental regulation of this species. To explore their possible role in and lay a foundation for subsequent research, 89 genes were identified across the whole genome of for the first time. These genes were present on all the chromosomes and were found to have expanded by tandem duplication and fragment duplication. Based on the results of a phylogenetic analysis, the 89 genes could be divided into either type I (38) or type II (51). Both the number and proportion of the type II genes were significantly greater than those of and , indicating that type II genes experienced a higher duplication rate or a lower loss rate. The results of both a sequence alignment and a conserved motif analysis suggest that the type II genes are more conserved, meaning that they may have originated and differentiated earlier than the type I genes did. At the same time, the presence of extra-long amino acid sequences may be an important feature of . Gene structure analysis revealed the number of introns of genes: twenty-one type I genes had no introns, and 13 type I genes contained only 1~2 introns. The type II genes have far more introns and longer introns than the type I genes do. Some MIKC genes have super large introns (≥15 kb), which are rare in other species. The super large introns of these MIKC genes may indicate richer gene expression. Moreover, the results of a qPCR expression analysis of the roots, flowers, leaves and seeds of showed that the genes were expressed in all those tissues. Overall, compared with that of the type I genes, the expression of the type II genes was significantly higher. The and genes (type II) were highly expressed specifically in the flowers, which may in turn regulate the size of the flower meristem and petals. was expressed specifically in the seeds, which might affect seed development. This study provides additional information for the functional characterization of the gene family and lays an important foundation for in-depth study of related genes, such as those involved in the development of the reproductive organs of .

摘要

基因编码影响植物生长和发育的转录因子。是一种具有观赏价值的油料树种,但对该物种发育调控的分子生物学研究较少。为了探讨它们在 中的可能作用,并为后续研究奠定基础,首次在 全基因组范围内鉴定了 89 个 基因。这些基因存在于所有染色体上,通过串联重复和片段重复而扩张。基于系统发育分析的结果,这 89 个 基因可以分为 I 型(38 个)或 II 型(51 个)。II 型基因的数量和比例均明显大于 和 ,表明 II 型基因经历了更高的复制率或更低的丢失率。序列比对和保守基序分析的结果表明,II 型基因更为保守,这意味着它们可能比 I 型基因起源更早、分化更早。同时,超长氨基酸序列的存在可能是 的一个重要特征。基因结构分析揭示了 基因的内含子数量:21 个 I 型基因没有内含子,13 个 I 型基因只含有 1~2 个内含子。II 型基因的内含子数量远多于 I 型基因,内含子也更长。一些 MIKC 基因具有超大内含子(≥15kb),这在其他物种中很少见。这些 MIKC 基因的超大内含子可能表明其基因表达更为丰富。此外,对 根、花、叶和种子进行 qPCR 表达分析的结果表明,所有组织中均表达 基因。总的来说,与 I 型基因相比,II 型基因的表达显著更高。和 基因(II 型)在花中特异性高表达,这可能反过来调节花分生组织和花瓣的大小。在种子中特异性表达 ,这可能影响种子发育。本研究为 基因家族的功能特征提供了更多信息,为深入研究相关基因(如参与 生殖器官发育的基因)奠定了重要基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff98/9960327/7758c7d68a80/ijms-24-03434-g001.jpg

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