UMR CNRS 8187 LOG, Université Littoral Côte d'Opale, Université de Lille, Wimereux, France.
Ecologie Systématique Evolution, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, France.
Environ Microbiol. 2023 Jul;25(7):1314-1328. doi: 10.1111/1462-2920.16358. Epub 2023 Mar 15.
Temporal dynamics of Syndiniales Group II were investigated combining 18S rDNA amplicon sequencing and direct microscopy counts (fluorescence in situ hybridization-tyramide signal amplification [FISH-TSA]) during 5 years. The study was undertaken in meso-eutrophic coastal ecosystem, dominated by diatoms, the haptophyte Phaeocystis globosa and exhibiting relatively low dinoflagellate abundance (max. 18.6 × 10 cells L ). Consistent temporal patterns of Syndiniales Group II were observed over consecutive years highlighting the existence of local populations. According to sequencing data, Syndiniales Group II showed increasing abundance and richness in summer and autumn. Dinospores counted by microscopy, were present at low abundances and were punctuated by transient peaks. In summer dinospore highest abundance (559 × 10 L ) and prevalence (38.5%) coincided with the peak abundance of the dinoflagellate Prorocentrum minimum (13 × 10 L ) while in autumn Syndiniales Group II likely had more diversified hosts. Although, several peaks of dinospore and read abundances coincided, there was no consistent relation between them. Ecological assembly processes at a seasonal scale revealed that stochastic processes were the main drivers (80%) of the Group II community assembly, though deterministic processes were noticeable (20%) in June and July. This latter observation may reflect the specific Syndiniales-dinoflagellate interactions in summer.
在 5 年的时间里,通过 18S rDNA 扩增子测序和直接显微镜计数(荧光原位杂交-酪胺信号扩增 [FISH-TSA])相结合,研究了 Syndiniales Group II 的时间动态。该研究在中营养沿海生态系统中进行,该生态系统以硅藻、甲藻 Phaeocystis globosa 为主,并且甲藻丰度相对较低(最高为 18.6×10 细胞 L )。连续几年观察到 Syndiniales Group II 的一致时间模式,突出了局部种群的存在。根据测序数据, Syndiniales Group II 在夏季和秋季的丰度和丰富度呈增加趋势。通过显微镜计数的 Dinospores 丰度较低,并伴有短暂的峰值。在夏季,Dinospores 的最高丰度(559×10 细胞 L )和流行率(38.5%)与甲藻 Prorocentrum minimum 的最高丰度(13×10 细胞 L )相吻合,而在秋季, Syndiniales Group II 可能有更多样化的宿主。尽管 Dinospores 和读数丰度的几个峰值同时出现,但它们之间没有一致的关系。季节性尺度的生态组装过程表明,随机过程是 Group II 群落组装的主要驱动因素(80%),尽管在 6 月和 7 月可以明显观察到确定性过程(20%)。后一种观察结果可能反映了夏季 Syndiniales 与甲藻的特定相互作用。