Nukaga Takumi, Takemura Akinori, Endo Yuka, Uesawa Yoshihiro, Ito Kousei
Laboratory of Biopharmaceutics, Graduate School of Pharmaceutical Sciences, Chiba University, Inohana 1-8-1, Chuo-ku, Chiba 260-8675, Japan.
Department of Medical Molecular Informatics, Meiji Pharmaceutical University, 2-522-1 Noshio, Kiyose, Tokyo 204-8588, Japan.
Toxicol Res (Camb). 2023 Jan 9;12(1):86-94. doi: 10.1093/toxres/tfac083. eCollection 2023 Feb.
Drug-induced liver injury (DILI) is a major factor influencing new drug withdrawal; therefore, an appropriate toxicity assessment at the preclinical stage is required. Previous in silico models have been established using compound information listed in large data sources, thereby limiting the DILI risk prediction for new drugs. Herein, we first constructed a model to predict DILI risk based on a molecular initiating event (MIE) predicted by quantitative structure-activity relationships, admetSAR parameters (e.g. cytochrome P450 reactivity, plasma protein binding, and water-solubility), and clinical information (maximum daily dose [MDD] and reactive metabolite [RM]) for 186 compounds. The accuracy of the models using MIE, MDD, RM, and admetSAR alone were 43.2%, 47.3%, 77.0%, and 68.9%, while the "predicted MIE + admetSAR + MDD + RM" model's accuracy was 75.7%. The contribution of MIE to the overall prediction accuracy was little effect or rather worsening it. However, it was considered that MIE was a valuable parameter and that it contributed to detect high DILI risk compounds in the early development stage. We next examined the effect of stepwise changes in MDD on altering the DILI risk and estimating the maximum safety dose (MSD) for clinical use based on structural information, admetSAR, and MIE parameters because it is important to estimate the dose that could prevent the DILI onset in clinical conditions. Low-MSD compounds might increase the DILI risk, as these compounds were classified as "most-DILI concern" at low doses. In conclusion, MIE parameters were especially useful to check the DILI concern compounds and to prevent the underestimation of DILI risk in the early stage of drug development.
药物性肝损伤(DILI)是影响新药撤市的一个主要因素;因此,临床前阶段需要进行适当的毒性评估。以往的计算机模拟模型是利用大型数据源中列出的化合物信息建立的,从而限制了对新药的DILI风险预测。在此,我们首先构建了一个模型,该模型基于定量构效关系预测的分子起始事件(MIE)、药物代谢和毒性预测数据库(admetSAR)参数(如细胞色素P450反应性、血浆蛋白结合率和水溶性)以及186种化合物的临床信息(最大日剂量[MDD]和活性代谢物[RM])来预测DILI风险。单独使用MIE、MDD、RM和admetSAR模型的准确率分别为43.2%、47.3%、77.0%和68.9%,而“预测的MIE + admetSAR + MDD + RM”模型的准确率为75.7%。MIE对总体预测准确率的贡献很小,甚至会使其变差。然而,人们认为MIE是一个有价值的参数,并有助于在早期开发阶段检测高DILI风险化合物。接下来,我们基于结构信息、admetSAR和MIE参数,研究了MDD的逐步变化对改变DILI风险以及估计临床使用的最大安全剂量(MSD)的影响,因为估计能够预防临床情况下DILI发生的剂量很重要。低MSD化合物可能会增加DILI风险,因为这些化合物在低剂量时被归类为“最受DILI关注”。总之,MIE参数对于检查DILI关注化合物以及在药物开发早期防止低估DILI风险特别有用。