Department of Botany, School of Life Sciences, St Joseph's University, Bengaluru, Karnataka, India.
Multi-Disciplinary Research Unit, Chengalpattu Government Medical College and Hospital, Chengalpattu, Tamil Nadu, India.
J Biomol Struct Dyn. 2023;41(24):15033-15044. doi: 10.1080/07391102.2023.2186703. Epub 2023 Mar 7.
The study aims to identify and validate a potential α-Amylase inhibitor from the leaf extract of the Parthenium hysterophorus. Molecular docking and dynamics analyses were performed to test the anti-diabetic efficacy of the compound by focusing on α-Amylase inhibition. The molecular docking study using AutoDock Vina (PyRx) and SeeSAR tools identified β-Sitosterol as an effective α-Amylase inhibitory compound. Among the analysed fifteen phytochemicals, β-Sitosterol demonstrated the most appreciable binding energy (-9.0 Kcal/mol) and is comparatively higher than the binding energy of the standard α-Amylase inhibitor, the Acarbose (-7.6 Kcal/mol). The significance of the interaction between β-Sitosterol and α-Amylase was further investigated using Molecular Dynamics Simulation (MDS) for 100 ns via GROMACS. The data reveals that the compound could exhibit the highest stability with α-Amylase regarding RMSD, RMSF, SASA and Potential Energy analysis. The key residue of α-Amylase (Asp -197) shows a significantly low fluctuation of 0.7 Å while interacting with β-Sitosterol. The data obtained from MDS results strongly suggested the potential inhibitory impact of β-Sitosterol on α-Amylase. In addition, the proposed phytochemical was purified from the leaf extracts of using the silica gel column chromatography and identified by GC-MS analysis. The purified β-Sitosterol demonstrated a significant 42.30% in-vitro α-Amylase enzyme inhibition property under 400 µg/ml concentration and thus supported the in-silico predictions. Further in-vivo investigations are necessary to analyse the efficiency of β-Sitosterol on α-Amylase inhibition to help the anti-diabetic potential of the phytocompound.Communicated by Ramaswamy H. Sarma.
本研究旨在从 Parthenium hysterophorus 的叶提取物中鉴定和验证一种潜在的α-淀粉酶抑制剂。通过聚焦于α-淀粉酶抑制作用,进行分子对接和动力学分析来测试该化合物的抗糖尿病功效。使用 AutoDock Vina(PyRx)和 SeeSAR 工具进行的分子对接研究,鉴定了β-谷甾醇作为一种有效的α-淀粉酶抑制化合物。在分析的十五种植物化学物质中,β-谷甾醇表现出最可观的结合能(-9.0 Kcal/mol),并且与标准α-淀粉酶抑制剂阿卡波糖(-7.6 Kcal/mol)的结合能相比,相对较高。使用 GROMACS 通过 100 ns 的分子动力学模拟(MDS)进一步研究了β-谷甾醇与α-淀粉酶之间相互作用的重要性。数据表明,就 RMSD、RMSF、SASA 和势能分析而言,该化合物可以与α-淀粉酶表现出最高的稳定性。α-淀粉酶的关键残基(Asp -197)在与β-谷甾醇相互作用时显示出明显低波动的 0.7 Å。从 MDS 结果获得的数据强烈表明β-谷甾醇对α-淀粉酶的潜在抑制作用。此外,使用硅胶柱色谱法从叶片提取物中纯化了所提出的植物化学物质,并通过 GC-MS 分析进行了鉴定。在 400 µg/ml 浓度下,纯化的β-谷甾醇对α-淀粉酶酶的抑制活性显著为 42.30%,因此支持了计算机预测。需要进行进一步的体内研究来分析β-谷甾醇对α-淀粉酶抑制的效率,以帮助分析该植物化合物的抗糖尿病潜力。由 Ramaswamy H. Sarma 传达。