Department of Cell Biology and Neuroscience, Rutgers University, Piscataway, New Jersey, USA.
J Biomol Struct Dyn. 2023;41(24):14786-14796. doi: 10.1080/07391102.2023.2188953. Epub 2023 Mar 11.
The missense mutation Y174H of FGF5 (FGF5-H174) had been associated with trichomegaly, characterized by abnormally long and pigmented eyelashes. The amino acid tyrosine (Tyr/Y) at position 174 is conserved across many species, proposedly holding important characteristics for the functions of FGF5. Microsecond molecular dynamics simulations along with protein-protein docking and residue interacting network analysis were employed to investigate the structural dynamics and binding mode of both wild-type (FGF5-WT) and its mutated counterpart (FGF5-H174). It was found that the mutation decreased number of hydrogen bonds within the protein, sheet secondary structure, interaction of residue 174 with other residues, and number of salt-bridges. On the other hand, the mutation increased solvent accessible surface area, number of hydrogen bonds between the protein and solvent, coil secondary structure, protein C-alpha backbone root mean square deviation, protein residue root mean square fluctuations, as well as occupied conformational space. In addition, protein-protein docking integrated with molecular dynamics simulations and molecular mechanics - Poisson-Boltzmann surface area (MM/PBSA) binding energy calculation demonstrated that the mutated variant possessed stronger binding affinity towards fibroblast growth factor receptor 1 (FGFR1). However, residue interaction network analysis demonstrated that the binding mode of the FGFR1-FGF5-H174 complex was drastically different from that of the FGFR1-FGF5-WT complex. In conclusion, the missense mutation conferred more instability within itself and stronger binding affinity towards FGFR1 with distinctively altered binding mode or residue connectivity. These findings might help explain the decreased pharmacological activity of FGF5-H174 towards FGFR1, underlying trichomegaly.Communicated by Ramaswamy H. Sarma.
FGF5(FGF5-H174)的错义突变 Y174H 与多毛症有关,其特征是睫毛异常长且色素沉着。位置 174 的氨基酸酪氨酸(Tyr/Y)在许多物种中保守,据推测对 FGF5 的功能具有重要特征。采用微秒分子动力学模拟以及蛋白质-蛋白质对接和残基相互作用网络分析,研究了野生型(FGF5-WT)及其突变体(FGF5-H174)的结构动力学和结合模式。结果发现,突变降低了蛋白质内部的氢键数量、β-折叠二级结构、残基 174 与其他残基的相互作用以及盐桥的数量。另一方面,突变增加了溶剂可及表面积、蛋白质与溶剂之间氢键的数量、无规卷曲二级结构、蛋白质 C-α骨架均方根偏差、蛋白质残基均方根波动以及占据的构象空间。此外,蛋白质-蛋白质对接与分子动力学模拟和分子力学-泊松-玻尔兹曼表面区域(MM/PBSA)结合能计算相结合,表明突变变体对成纤维细胞生长因子受体 1(FGFR1)具有更强的结合亲和力。然而,残基相互作用网络分析表明,FGFR1-FGF5-H174 复合物的结合模式与 FGFR1-FGF5-WT 复合物有很大的不同。总之,错义突变赋予自身更多的不稳定性,并对 FGFR1 具有更强的结合亲和力,同时具有明显改变的结合模式或残基连接性。这些发现可能有助于解释 FGF5-H174 对 FGFR1 的药理学活性降低,从而导致多毛症。