Facultad de Química, Departamento de Fisicoquímica, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.
Facultad de Química, Departamento de Fisicoquímica, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.
Biophys Chem. 2023 May;296:106986. doi: 10.1016/j.bpc.2023.106986. Epub 2023 Feb 27.
Previous studies propose that genetic mutations and post-translational modifications in protein crystallins promote protein aggregation and are considered significant risk factors for cataract formation. The βB2-crystallin (HβB2C) forms a high proportion of proteins in the human eye lens. Different congenital mutations and post-translational deamidations in βB2-crystallin have been reported and linked to cataract formation. In this work, we employed extensive all-atom molecular dynamics simulations to evaluate the conformational stability of deamidated and mutated HβB2C. Our results show critical changes in the protein surface and its native contacts due to a modification in the conformational equilibrium of these proteins. The double deamidated (Q70E/Q162E) and single deamidated (Q70E) impact the well compact conformation of the HβB2C. These post-translational modifications allow the exposure of the protein hydrophobic interface, which lead to the exposure of electronegative residues. On the other hand, our mutational studies showed that the S143F mutation modifies the hydrogen-bond network of an antiparallel β-sheet, unfolding the C-terminal domain. Interestingly, the chain termination mutation (Q155X) does not unfold the N-terminal domain. However, the resultant conformation is more compact and avoids the exposure of the hydrophobic interface. Our results provide valuable information about the first steps of HβB2C unfolding in the presence of deamidated amino acids that have been reported to appear during aging. The findings reported in this work are essential for the general knowledge of the initial steps in the cataract formation mechanism, which may be helpful for the further development of molecules with pharmacological potential against cataract disease.
先前的研究表明,蛋白质晶体蛋白中的基因突变和翻译后修饰促进了蛋白质聚集,并被认为是白内障形成的重要风险因素。βB2-晶体蛋白(HβB2C)在人眼晶状体中构成了很大比例的蛋白质。已经报道了不同的先天性突变和βB2-晶体蛋白的翻译后脱酰胺作用,并与白内障形成有关。在这项工作中,我们采用了广泛的全原子分子动力学模拟来评估脱酰胺和突变的 HβB2C 的构象稳定性。我们的结果表明,由于这些蛋白质构象平衡的改变,蛋白质表面及其天然接触发生了关键性变化。双脱酰胺(Q70E/Q162E)和单脱酰胺(Q70E)影响 HβB2C 的紧密折叠构象。这些翻译后修饰允许蛋白质疏水性界面暴露,从而导致带负电荷的残基暴露。另一方面,我们的突变研究表明,S143F 突变改变了反平行β-折叠的氢键网络,使 C 末端结构域展开。有趣的是,链终止突变(Q155X)不会使 N 末端结构域展开。然而,所得构象更加紧凑,并避免了疏水性界面的暴露。我们的结果提供了有关在报道的老化过程中出现的脱酰胺氨基酸存在下 HβB2C 展开的初始步骤的有价值的信息。这项工作的发现对于白内障形成机制的初始步骤的一般知识至关重要,这可能有助于进一步开发具有治疗白内障疾病潜力的药理学分子。