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模拟尿酸酶的小型蛋白的合理设计:封装在 ZIF-8 中用于尿酸检测。

Rational design of mini protein mimicking uricase: Encapsulation in ZIF-8 for uric acid detection.

机构信息

Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.

Enzyme and Microbial Technology Research Centre (EMTech), Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.

出版信息

Proteins. 2023 Jul;91(7):967-979. doi: 10.1002/prot.26485. Epub 2023 Mar 22.

DOI:10.1002/prot.26485
PMID:36908223
Abstract

Five mini proteins mimicking uricase comprising 20, 40, 60, 80, and 100 amino acids were designed based on the conserved active site residues within the same dimer, using the crystal structure of tetrameric uricase from Arthrobacter globiformis (PDB ID: 2yzb) as a template. Based on molecular docking analysis, the smallest mini protein, mp20, shared similar residues to that of native uricase that formed hydrogen bonds with uric acid and was chosen for further studies. Although purified recombinant mp20 did not exhibit uricase activity, it showed specific binding towards uric acid and evinced excellent thermotolerance and structural stability at temperatures ranging from 10°C to 100°C, emulating its natural origin. To explore the potential of mp20 as a bioreceptor in uric acid sensing, mp20 was encapsulated within zeolitic imidazolate framework-8 (mp20@ZIF-8) followed by the modification on rGO-screen printed electrode (rGO/SPCE) to maintain the structural stability. An irreversible anodic peak and increased semicircular arcs of the Nyquist plot with an increase of the analyte concentrations were observed by utilizing cyclic voltammetry and electrochemical impedance spectroscopy (EIS), suggesting the detection of uric acid occurred, which is based on substrate-mp20 interaction.

摘要

基于 Arthrobacter globiformis (PDB ID: 2yzb)四聚尿酸酶晶体结构中相同二聚体的保守活性位点残基,设计了 5 种模拟尿酸酶的小型蛋白,分别由 20、40、60、80 和 100 个氨基酸组成。基于分子对接分析,选择最小的小型蛋白 mp20 进行进一步研究,因为它与天然尿酸酶具有相似的残基,与尿酸形成氢键。尽管纯化的重组 mp20 没有表现出尿酸酶活性,但它对尿酸具有特异性结合,并在 10°C 至 100°C 的温度范围内表现出优异的热稳定性和结构稳定性,模拟其天然来源。为了探索 mp20 作为尿酸传感生物受体的潜力,将 mp20 封装在沸石咪唑酯骨架-8(mp20@ZIF-8)中,然后在 rGO 丝网印刷电极(rGO/SPCE)上进行修饰以保持结构稳定性。通过循环伏安法和电化学阻抗谱(EIS)观察到随着分析物浓度的增加,不可逆的阳极峰和奈奎斯特图的半圆半径增加,表明发生了基于基质-mp20 相互作用的尿酸检测。

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