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研究(ZnO)纳米团簇在有/无糖存在的情况下与葡萄糖氧化酶-FAD 的相互作用。

study of interaction of (ZnO) nanocluster to glucose oxidase-FAD in absence and presence of glucose.

机构信息

Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, Delhi, India.

Department of Chemistry, Indian Institute of Technology, Delhi, India.

出版信息

J Biomol Struct Dyn. 2023;41(24):15234-15242. doi: 10.1080/07391102.2023.2188431. Epub 2023 Mar 13.

Abstract

Diabetes mellitus is one of the foremost global concerns, as it has impacted millions of lives. Therefore, there is an urgent need to develop a technology for continuous glucose monitoring in vivo. In the current study, we employed computational methods such as docking, MD simulations, and MM/GBSA, to obtain molecular insights into the interaction between (ZnO) nanocluster and glucose oxidase (GOx) that cannot be obtained through experiments alone. For this, theoretical modeling of the 3D cage-like (ZnO)12 nanocluster in ground state configuration was performed. Further docking of (ZnO) nanocluster with GOx molecule was carried out to find the nano-bio-interaction of (ZnO)-GOx complex. To understand the whole interaction and dynamics of (ZnO)-GOx-FAD-with and without glucose, we performed MD simulation and MM/GBSA analysis of (ZnO)-GOx-FAD complex and glucose-(ZnO)-GOx-FAD complex separately. The interaction was found to be stable, and the binding energy of (ZnO) to GOx-FAD increases in the presence of glucose by 6 kcal mol. This may be helpful in nano probing of the interaction of GOx with glucose. It can help in making a device like fluorescence resonance energy transfer (FRET) based nano-biosensor to monitor the glucose level in pre and post diabetic patient.Communicated by Ramaswamy H. Sarma.

摘要

糖尿病是全球首要关注的问题之一,因为它已经影响了数百万人的生活。因此,迫切需要开发一种用于体内连续血糖监测的技术。在目前的研究中,我们采用了计算方法,如对接、MD 模拟和 MM/GBSA,以获得仅通过实验无法获得的(ZnO)纳米团簇与葡萄糖氧化酶(GOx)相互作用的分子见解。为此,我们对基态构型的 3D 笼状(ZnO)12 纳米团簇进行了理论建模。进一步将(ZnO)纳米团簇与 GOx 分子对接,以找到(ZnO)-GOx 复合物的纳米生物相互作用。为了了解(ZnO)-GOx-FAD 与和没有葡萄糖的整个相互作用和动力学,我们分别对(ZnO)-GOx-FAD 复合物和葡萄糖-(ZnO)-GOx-FAD 复合物进行了 MD 模拟和 MM/GBSA 分析。发现相互作用稳定,并且在存在葡萄糖的情况下,(ZnO)与 GOx-FAD 的结合能增加了 6kcal/mol。这可能有助于纳米探测 GOx 与葡萄糖的相互作用。它可以帮助制造基于荧光共振能量转移(FRET)的纳米生物传感器等设备,以监测糖尿病前期和后期患者的血糖水平。由 Ramaswamy H. Sarma 传达。

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