Suppr超能文献

α-L-岩藻糖苷酶2()在肝细胞癌中的预后及免疫作用

Prognostic and immunological role of alpha-L-fucosidase 2 () in hepatocellular carcinoma.

作者信息

Hu Yuanhui, Tang Dongling, Zhang Pingan

机构信息

Department of Laboratory Medicine, Renmin Hospital of Wuhan University, Wuhan, China.

出版信息

Transl Cancer Res. 2023 Feb 28;12(2):257-272. doi: 10.21037/tcr-22-1850. Epub 2023 Feb 13.

Abstract

BACKGROUND

This study investigated the prognostic and immunological significance of alpha-L-fucosidase 2 () in hepatocellular cancer (HCC).

METHODS

The expression of and its clinical and prognostic values were explored across several databases, namely the University of Alabama Cancer Database, The Cancer Genome Atlas, Gene Expression Profiling Interactive Analysis, and the Human Protein Atlas. The prognostic relevance of was investigated using Kaplan-Meier curves, nomograms, and Cox analysis. The "limma" package in R was used to identify differentially expressed genes between high and low expression. A protein interaction network was established using the Search Tool for the Retrieval of Interacting Genes (STRING), whereas hub genes and clustering modules were identified using Cytoscape. "clusterProfiler", an R package, was used to examine the potential function of . Using gene set enrichment analysis, signaling pathways associated with expression were identified. Cell-type Identification by Estimating Relative Subsets of RNA Transcripts (CIBERSORT), Tumor Immune Estimation Resource (TIMER) 2.0, and Tumor and Immune System Interaction Database (TISIDB) were used to examine immune infiltration and in HCC.

RESULTS

Many datasets indicated that expression is higher in HCC, and that this is related to age and overall survival (OS). With the cutoff value of 50% as the dividing threshold, the patients were divided into a high-FUCA2 expression group (n=167) and a low-FUCA2 expression group (n=168). High levels of FUCA2 expression coincided with decreased OS. expression in HCC was associated with immune infiltrates. The functional mechanisms of depend on signal release, extracellular matrix collagen, and neuroactive ligands and receptors.

CONCLUSIONS

In HCC, increased expression is associated with a poor prognosis and immune infiltration. may serve as an immunological and predictive biomarker for HCC.

摘要

背景

本研究探讨了α-L-岩藻糖苷酶2(FUCA2)在肝细胞癌(HCC)中的预后及免疫学意义。

方法

通过多个数据库,即阿拉巴马大学癌症数据库、癌症基因组图谱、基因表达谱交互分析数据库和人类蛋白质图谱,探究了FUCA2的表达及其临床和预后价值。使用Kaplan-Meier曲线、列线图和Cox分析研究了FUCA2的预后相关性。利用R语言中的“limma”软件包识别高表达和低表达FUCA2之间的差异表达基因。使用搜索相互作用基因的工具(STRING)建立蛋白质相互作用网络,而使用Cytoscape识别枢纽基因和聚类模块。使用R软件包“clusterProfiler”研究FUCA2的潜在功能。通过基因集富集分析,确定与FUCA2表达相关的信号通路。使用通过估计RNA转录本相对子集鉴定细胞类型(CIBERSORT)、肿瘤免疫估计资源(TIMER)2.0和肿瘤与免疫系统相互作用数据库(TISIDB)来研究HCC中的免疫浸润和FUCA2。

结果

许多数据集表明,HCC中FUCA2表达较高,且这与年龄和总生存期(OS)相关。以50%的截断值作为划分阈值,将患者分为高FUCA2表达组(n = 167)和低FUCA2表达组(n = 168)。高水平的FUCA2表达与OS降低一致。HCC中FUCA2的表达与免疫浸润相关。FUCA2的功能机制取决于信号释放、细胞外基质胶原蛋白以及神经活性配体和受体。

结论

在HCC中,FUCA2表达增加与预后不良和免疫浸润相关。FUCA2可能作为HCC的一种免疫学和预测性生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ead/10007884/aa2460e0e430/tcr-12-02-257-f1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验