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营养物质和流动塑造了菌株之间的循环优势博弈。

Nutrients and flow shape the cyclic dominance games between strains.

机构信息

Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000 Neuchâtel, Switzerland.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2023 May 8;378(1876):20210503. doi: 10.1098/rstb.2021.0503. Epub 2023 Mar 20.

Abstract

Evolutionary game theory has provided various models to explain the coexistence of competing strategies, one of which is the rock-paper-scissors (RPS) game. A system of three strains-a toxin-producer, a resistant and a sensitive-has become a classic experimental model for studying RPS games. Previous experimental and theoretical studies, however, often ignored the influence of ecological factors such as nutrients and toxin dynamics on the evolutionary game dynamics. In this work, we combine experiments and modelling to study how these factors affect competition dynamics. Using three-dimensional printed mini-bioreactors, we tracked the frequency of the three strains in different culturing media and under different flow regimes. Although our experimental system fulfilled the requirements of cyclic dominance, we did not observe clear cycles or long-term coexistence between strains. We found that both nutrients and flow rates strongly impacted population dynamics. In our simulations, we explicitly modelled the release, removal and diffusion of toxin. We showed that the amount of toxin that is retained in the system is a simple indicator that can predict competition outcomes across broad parameter space. Moreover, our simulation results suggest that high rates of toxin diffusion might have prevented cyclic patterns from emerging in our experimental system. This article is part of the theme issue 'Half a century of evolutionary games: a synthesis of theory, application and future directions'.

摘要

进化博弈论提供了各种模型来解释竞争策略的共存,其中之一是石头剪刀布(RPS)游戏。一个由三种菌株——产毒菌、抗性菌和敏感菌——组成的系统已经成为研究 RPS 游戏的经典实验模型。然而,之前的实验和理论研究往往忽略了营养物质和毒素动力学等生态因素对进化博弈动态的影响。在这项工作中,我们结合实验和建模来研究这些因素如何影响竞争动态。我们使用三维打印的微型生物反应器,在不同的培养介质和不同的流动状态下跟踪三种菌株的频率。尽管我们的实验系统满足循环优势的要求,但我们没有观察到菌株之间明显的循环或长期共存。我们发现,营养物质和流速都强烈影响种群动态。在我们的模拟中,我们明确地对毒素的释放、去除和扩散进行了建模。我们表明,系统中保留的毒素量是一个简单的指标,可以预测在广泛的参数空间中的竞争结果。此外,我们的模拟结果表明,毒素的高扩散率可能阻止了我们的实验系统中出现循环模式。本文是主题为“进化博弈论半个世纪:理论、应用和未来方向的综合”的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8650/10024984/89d6b8e6d1fd/rstb20210503f01.jpg

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