Kim Ju Hee, Ham You Ju, Kim Seung Bum
Department of Microbiology and Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, 99 Daehak-ro, Yuseong, Daejeon 34134, Republic of Korea.
Int J Syst Evol Microbiol. 2023 Mar;73(3). doi: 10.1099/ijsem.0.005755.
An actinobacterial strain designated MMS20-HV4-12, displaying a high hydrolytic potential for various substrates, was isolated from a riverside soil sample and characterized by polyphasic taxonomic analysis. Growth occurred at 10-37 °C (optimum, 30°C), with NaCl concentrations of 0-4 % (optimum, 0 %) and at pH 7-9 (optimum, pH 8). MMS20-HV4-12 was catalase-positive, oxidase-negative, rod-shaped and formed creamy white-coloured colonies. Based on the results of 16S rRNA gene sequence analysis, MMS20-HV4-12 was found to be mostly related to the type strains of (98.3 % sequence similarity), (98.1 %) and (98.0 %). MMS20-HV4-12 showed optimal growth on Reaoner's 2A agar, forming white-coloured colonies. The diagnostic polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol, the major fatty acids were iso-C, C ω8 and 10-methyl-C, the major isoprenoid quinone was MK-8(H), the diagnostic cell-wall sugar was galactose, and the cell-wall diamino acid was ll-diaminopimelic acid. The genome of MMS20-HV4-12 was 4.47 Mbp in size with a G+C content of 72.9 mol%. The genome based analysis indicated low relatedness between MMS20-HV4-12 and all compared species of , as the highest digital DNA-DNA hybridization and the orthologous average nucleotide identity values were 26.8 and 83.8% respectively. Based on genotypic, phenotypic and phylogenomic characterization, MMS20-HV4-12 evidently represents a novel species of genus , for which the name sp. nov. (type strain=MMS20-HV4-12=KCTC 49651=LMG 32360) is proposed.
从河边土壤样本中分离出一株放线菌菌株,命名为MMS20-HV4-12,该菌株对多种底物具有较高的水解潜力,并通过多相分类分析进行了表征。其生长温度为10-37°C(最适温度为30°C),NaCl浓度为0-4%(最适浓度为0%),pH值为7-9(最适pH值为8)。MMS20-HV4-12过氧化氢酶阳性,氧化酶阴性,呈杆状,形成乳白色菌落。基于16S rRNA基因序列分析结果,发现MMS20-HV4-12与(序列相似性为98.3%)、(98.1%)和(98.0%)的模式菌株关系最为密切。MMS20-HV4-12在Reaoner's 2A琼脂上生长最佳,形成白色菌落。诊断性极性脂质谱由二磷脂酰甘油、磷脂酰甘油和磷脂酰肌醇组成,主要脂肪酸为异-C、C ω8和10-甲基-C,主要类异戊二烯醌为MK-8(H),诊断性细胞壁糖为半乳糖,细胞壁二氨基酸为ll-二氨基庚二酸。MMS20-HV4-12的基因组大小为4.47 Mbp,G+C含量为72.9 mol%。基于基因组的分析表明,MMS20-HV4-12与所有已比较的属物种之间的相关性较低,最高的数字DNA-DNA杂交和直系同源平均核苷酸同一性值分别为26.8%和83.8%。基于基因型、表型和系统基因组学特征,MMS20-HV4-12显然代表了一个新的属物种,为此提出了新的名称 sp. nov.(模式菌株 = MMS20-HV4-12 = KCTC 49651 = LMG 32360)。