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整合网络药理学方法研究6-姜烯酚抗宫颈癌的多靶点药理机制

Integrating network pharmacology approaches for the investigation of multi-target pharmacological mechanism of 6-shogaol against cervical cancer.

作者信息

Elasbali Abdelbaset Mohamed, Al-Soud Waleed Abu, Mousa Elayyan Afnan Elayyan, Al-Oanzi Ziad H, Alhassan Hassan H, Mohamed Bashir M, Alanazi Hamad H, Ashraf Mohammad Saquib, Moiz Shadman, Patel Mitesh, Patel Mirav, Adnan Mohd

机构信息

Department of Clinical Laboratory Science, College of Applied Sciences-Qurayyat, Jouf University, Saudi Arabia.

Department of Clinical Laboratory Science, College of Applied Sciences-Sakaka, Jouf University, Saudi Arabia.

出版信息

J Biomol Struct Dyn. 2023;41(23):14135-14151. doi: 10.1080/07391102.2023.2191719. Epub 2023 Mar 21.

Abstract

Traditional treatment of cancer has been plagued by a number of obstacles, such as multiple drug resistance, toxicity and financial constraints. In contrast, phytochemicals that modulate a variety of molecular mechanisms are garnering increasing interest in complementary and alternative medicine. Therefore, an approach based on network pharmacology was used in the present study to explore possible regulatory mechanisms of 6-shogaol as a potential treatment for cervical cancer (CC). A number of public databases were screened to collect information on the target genes of 6-shogaol (SuperPred, Targetnet, Swiss target prediction and PharmMapper), while targets pertaining to CC were taken from disease databases (DisGeNet and Genecards) and gene expression omnibus (GEO) provided expression datasets. With STRING and Cytoscape, protein-protein interactions (PPI) were generated and topology analysis along with CytoNCA were used to identify the Hub genes. The Gene Ontology (GO) database Enrichr was used to annotate the target proteins, while, using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database, signaling pathway enrichment analysis was conducted. Molecular docking and survival analysis for the Hub genes revealed four genes (HSP90AA1, HRAS, ESR1 and EGFR) with lowest binding energy and majority of the Hub genes (EGFR, SRC, CASP-3, HSP90AA1, MTOR, MAPK-1, MDM2 and ESR1) were linked with the overall survival of CC patients. In conclusion, the present study provides the scientific evidence which strongly supports the use of 6-shogoal as an inhibitor of cellular proliferation, growth, migration as well as inducer of apoptosis via targeting the hub genes involved in the growth of CC.Communicated by Ramaswamy H. Sarma.

摘要

癌症的传统治疗一直受到诸多障碍的困扰,如多药耐药性、毒性和经济限制。相比之下,能够调节多种分子机制的植物化学物质在补充和替代医学中越来越受到关注。因此,本研究采用基于网络药理学的方法,探索6-姜辣素作为宫颈癌(CC)潜在治疗药物的可能调控机制。筛选了多个公共数据库以收集6-姜辣素的靶基因信息(SuperPred、Targetnet、瑞士靶标预测和PharmMapper),而与CC相关的靶标则取自疾病数据库(DisGeNet和Genecards),基因表达综合数据库(GEO)提供表达数据集。利用STRING和Cytoscape生成蛋白质-蛋白质相互作用(PPI),并使用拓扑分析和CytoNCA来识别枢纽基因。利用基因本体论(GO)数据库Enrichr对靶蛋白进行注释,同时,使用京都基因与基因组百科全书(KEGG)数据库进行信号通路富集分析。对枢纽基因的分子对接和生存分析显示,有四个基因(HSP90AA1、HRAS、ESR1和EGFR)结合能最低,且大多数枢纽基因(EGFR、SRC、CASP-3、HSP90AA1、MTOR、MAPK-1、MDM2和ESR1)与CC患者的总生存期相关。总之,本研究提供了科学证据,有力支持将6-姜辣素作为一种通过靶向参与CC生长的枢纽基因来抑制细胞增殖、生长、迁移以及诱导细胞凋亡的药物。由Ramaswamy H. Sarma传达。

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