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YIF1B 相关的卡亚-巴卡塔-马松综合征:一例新病例报告及文献复习。

YIF1B-related Kaya-Barakat-Masson Syndrome: Report of a new patient and literature review.

机构信息

Department of Pediatric Genetics, Samsun Education and Research Hospital, Samsun, Turkey.

Deta-Gen Genetic Diseases Research Center, Kayseri, Turkey.

出版信息

Eur J Med Genet. 2023 Jun;66(6):104751. doi: 10.1016/j.ejmg.2023.104751. Epub 2023 Mar 21.

Abstract

Kaya-Barakat-Masson syndrome (KABAMAS) is a recently identified severe neurodevelopmental disorder characterized by severe global developmental delay, epilepsy, movement disorder, epilepsy, and microcephaly. KABAMAS is caused by bi-allelic variants in the YIF1B gene which encodes a trafficking protein involved in the anterograde traffic from the endoplasmic reticulum to the cell membrane including neural cells in association with other trafficking proteins and also Golgi apparatus morphology. That's why clinical overlapping between KABAMAS and golgipathies isn't surprising. It is a rare condition with only 24 patients reported to date. Here we described a 5.5-year-old boy presenting with severe global developmental delay, epileptic encephalopathy, microcephaly, dystonia, spasticity, blindness, feeding difficulties, respiratory failure, and dysmorphic features. Whole exome sequencing identified homozygous splice site variation (NM_001039672.3: c.297+1G > A) in the YIF1B gene. This splice site variant is rare in the general population (gnomAD Variant allele fraction (VAF): 0.0007%, 2 heterozygotes, 0 homozygotes) and has not previously been associated with the disease. Multiple in silico tools predict a deleterious effect of this splice site change. Considering the points mentioned above, we have considered the detected variant as pathogenic according to guidelines in light of current knowledge. By reporting a new case with the homozygous YIF1B splice site variant we provide further evidence to clinical and molecular data of this recently recognized severe neurodevelopmental disorder. We further emphasize that trafficking errors should be considered as an underlying mechanism in undiagnosed severe neurodevelopmental disorders.

摘要

卡亚-巴拉卡特-马松综合征(KABAMAS)是一种新近确定的严重神经发育障碍,其特征为严重的全面发育迟缓、癫痫、运动障碍、癫痫和小头畸形。KABAMAS 由 YIF1B 基因的双等位基因变异引起,该基因编码一种参与从内质网到细胞膜的顺行运输的转运蛋白,包括与其他转运蛋白和高尔基体形态相关的神经细胞。这就是为什么 KABAMAS 和 golgipathies 之间存在临床重叠并不奇怪。这是一种罕见的疾病,迄今为止仅报告了 24 例患者。在这里,我们描述了一名 5.5 岁男孩,表现为严重的全面发育迟缓、癫痫性脑病、小头畸形、肌张力障碍、痉挛、失明、喂养困难、呼吸衰竭和发育不良特征。全外显子组测序发现 YIF1B 基因的纯合剪接位点变异(NM_001039672.3:c.297+1G>A)。这种剪接位点变异在一般人群中罕见(gnomAD 变异等位基因频率(VAF):0.0007%,2 个杂合子,0 个纯合子),并且以前与疾病无关。多种计算机预测工具预测该剪接位点变化具有有害影响。考虑到上述几点,根据目前的知识,我们认为该检测到的变异符合指南中的致病性。通过报告一个具有 YIF1B 剪接位点纯合变异的新病例,我们提供了进一步的证据,证明了这种最近发现的严重神经发育障碍的临床和分子数据。我们进一步强调,转运错误应被视为未诊断的严重神经发育障碍的潜在机制。

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