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全面分析结直肠腺癌 SDH 预后、肿瘤微环境与免疫治疗反应

Comprehensive analysis of the prognosis, tumor microenvironment, and immunotherapy response of SDHs in colon adenocarcinoma.

机构信息

School and Hospital of Stomatology, Wenzhou Medical University, Wenzhou, Zhejiang, China.

School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou, Zhejiang, China.

出版信息

Front Immunol. 2023 Mar 6;14:1093974. doi: 10.3389/fimmu.2023.1093974. eCollection 2023.

Abstract

BACKGROUND

Succinate dehydrogenase (SDH), one of the key enzymes in the tricarboxylic acid cycle, is mainly found in the mitochondria. SDH consists of four subunits encoding SDHA, SDHB, SDHC, and SDHD. The biological function of SDH is significantly related to cancer progression. Colorectal cancer (CRC) is one of the most common malignant tumors globally, whose most common histological subtype is colon adenocarcinoma (COAD). However, the correlation between SDH factors and COAD remains unclear.

METHODS

The data on pan-cancer was obtained from The Cancer Genome Atlas (TCGA) database. Kaplan-Meier survival analysis showed the prognostic ability of SDHs. The cBioPortal database reflected genetic variations of SDHs. The correlation analysis was conducted between SDHs and mitochondrial energy metabolism genes (MMGs) and the protein-protein interaction (PPI) network was built. Consequently, Univariate and Multivariate Cox Regression Analysis on SDHs and other clinical characteristics were conducted. A nomogram was established. The ssGSEA analysis visualized the association between SDHs and immune infiltration. Immunophenoscore (IPS) explored the correlation between SDHs and immunotherapy, and the correlation between SDHs and targeted therapy was investigated through Genomics of Drug Sensitivity in Cancer. Finally, qPCR and immunohistochemistry detected SDHs' expression.

RESULTS

After assessing SDHs differential expression in pan-cancer, we found that SDHB, SDHC, and SDHD benefit COAD patients. The cBioPortal database demonstrated that SDHA was the top gene in mutation frequency rank. Correlation analysis mirrored a strong link between SDHs and MMGs. We formulated a nomogram and found that SDHB, SDHC, SDHD, and clinical characteristics correlated with COAD patients' survival. For T helper cells, Th2 cells, and Tem, SDHA, SDHB, SDHC, and SDHD were significantly enriched in the high expression group. Moreover, COAD patients with high SDHA expression were more suitable for immunotherapy. And COAD patients with different SDHs' expression have different sensitivity to targeted drugs. Further verifying the gene and protein expression levels of SDHs, we found that the tissues were consistent with the bioinformatics analysis.

CONCLUSIONS

Our study analyzed the expression and prognostic value of SDHs in COAD, explored the pathway mechanisms involved, and the immune cell correlations, indicating that SDHs might be biomarkers for COAD patients.

摘要

背景

琥珀酸脱氢酶(SDH)是三羧酸循环中的关键酶之一,主要存在于线粒体中。SDH 由四个亚基编码,分别是 SDHA、SDHB、SDHC 和 SDHD。SDH 的生物学功能与癌症的进展密切相关。结直肠癌(CRC)是全球最常见的恶性肿瘤之一,其最常见的组织学亚型是结肠腺癌(COAD)。然而,SDH 因子与 COAD 的相关性尚不清楚。

方法

从癌症基因组图谱(TCGA)数据库中获取泛癌症数据。Kaplan-Meier 生存分析显示了 SDH 的预后能力。cBioPortal 数据库反映了 SDH 的遗传变异。对 SDHs 与线粒体能量代谢基因(MMGs)进行相关性分析,并构建蛋白质-蛋白质相互作用(PPI)网络。然后,对 SDHs 与其他临床特征进行单变量和多变量 Cox 回归分析。建立列线图。ssGSEA 分析可视化了 SDHs 与免疫浸润的关联。免疫表型评分(IPS)探索了 SDHs 与免疫治疗的相关性,并通过癌症药物敏感性基因组学研究了 SDHs 与靶向治疗的相关性。最后,通过 qPCR 和免疫组织化学检测 SDHs 的表达。

结果

评估了泛癌症中 SDHs 的差异表达后,我们发现 SDHB、SDHC 和 SDHD 对 COAD 患者有益。cBioPortal 数据库显示 SDHA 是突变频率排名最高的基因。相关性分析反映了 SDHs 与 MMGs 之间的紧密联系。我们制定了一个列线图,发现 SDHB、SDHC、SDHD 和临床特征与 COAD 患者的生存相关。对于辅助性 T 细胞、Th2 细胞和 Tem,SDHA、SDHB、SDHC 和 SDHD 在高表达组中显著富集。此外,高 SDHA 表达的 COAD 患者更适合免疫治疗。而且,不同 SDHs 表达的 COAD 患者对靶向药物的敏感性不同。进一步验证了 SDHs 的基因和蛋白表达水平,我们发现组织与生物信息学分析一致。

结论

本研究分析了 SDHs 在 COAD 中的表达和预后价值,探讨了相关的通路机制和免疫细胞相关性,表明 SDHs 可能是 COAD 患者的生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dec7/10025334/b7759e60bc18/fimmu-14-1093974-g001.jpg

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