• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

高通量筛选获得蛋白质晶体学的晶体命中。

High-Throughput Screening to Obtain Crystal Hits for Protein Crystallography.

机构信息

National High-Throughput Crystallization Center, Hauptman-Woodward Medical Research Institute.

National High-Throughput Crystallization Center, Hauptman-Woodward Medical Research Institute; Department of Biochemistry, Jacobs School of Medicine and Biomedical Sciences, The State University of New York;

出版信息

J Vis Exp. 2023 Mar 10(193). doi: 10.3791/65211.

DOI:10.3791/65211
PMID:36971435
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10259656/
Abstract

X-ray crystallography is the most commonly employed technique to discern macromolecular structures, but the crucial step of crystallizing a protein into an ordered lattice amenable to diffraction remains challenging. The crystallization of biomolecules is largely experimentally defined, and this process can be labor-intensive and prohibitive to researchers at resource-limited institutions. At the National High-Throughput Crystallization (HTX) Center, highly reproducible methods have been implemented to facilitate crystal growth, including an automated high-throughput 1,536-well microbatch-under-oil plate setup designed to sample a wide breadth of crystallization parameters. Plates are monitored using state-of-the-art imaging modalities over the course of 6 weeks to provide insight into crystal growth, as well as to accurately distinguish valuable crystal hits. Furthermore, the implementation of a trained artificial intelligence scoring algorithm for identifying crystal hits, coupled with an open-source, user-friendly interface for viewing experimental images, streamlines the process of analyzing crystal growth images. Here, the key procedures and instrumentation are described for the preparation of the cocktails and crystallization plates, imaging the plates, and identifying hits in a way that ensures reproducibility and increases the likelihood of successful crystallization.

摘要

X 射线晶体学是最常用于辨别大分子结构的技术,但将蛋白质结晶成适合衍射的有序晶格的关键步骤仍然具有挑战性。生物分子的结晶在很大程度上是通过实验定义的,这个过程可能很繁琐,而且对资源有限的机构的研究人员来说也是昂贵的。在国家高通量结晶(HTX)中心,实施了高度可重复的方法来促进晶体生长,包括设计用于采样广泛结晶参数的自动化高通量 1536 孔微批量油板设置。在 6 周的时间里,使用最先进的成像方式监测平板,以深入了解晶体生长情况,并准确区分有价值的晶体命中。此外,实施了经过训练的人工智能评分算法来识别晶体命中,再加上用于查看实验图像的开源、用户友好的界面,简化了分析晶体生长图像的过程。在这里,描述了用于制备鸡尾酒和结晶板、对平板成像以及以确保重现性和提高结晶成功率的方式识别命中的关键步骤和仪器。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/305e17ce3d64/nihms-1901328-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/df78280a53ef/nihms-1901328-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/279cf764a66d/nihms-1901328-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/cee0cea667e8/nihms-1901328-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/4c7039d932aa/nihms-1901328-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/305e17ce3d64/nihms-1901328-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/df78280a53ef/nihms-1901328-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/279cf764a66d/nihms-1901328-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/cee0cea667e8/nihms-1901328-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/4c7039d932aa/nihms-1901328-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/760d/10259656/305e17ce3d64/nihms-1901328-f0005.jpg

相似文献

1
High-Throughput Screening to Obtain Crystal Hits for Protein Crystallography.高通量筛选获得蛋白质晶体学的晶体命中。
J Vis Exp. 2023 Mar 10(193). doi: 10.3791/65211.
2
Using high-throughput in situ plate screening to evaluate the effect of dehydration on protein crystals.使用高通量原位平板筛选来评估脱水对蛋白质晶体的影响。
Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):920-3. doi: 10.1107/S0907444913002412. Epub 2013 Apr 19.
3
20 years of crystal hits: progress and promise in ultrahigh-throughput crystallization screening.20 年的晶体碰撞:超高通量结晶筛选的进展与前景。
Acta Crystallogr D Struct Biol. 2023 Mar 1;79(Pt 3):198-205. doi: 10.1107/S2059798323001274. Epub 2023 Feb 27.
4
High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions.在室温及低温条件下对蛋白质晶体进行高通量原位 X 射线筛选和数据收集。
Nat Protoc. 2018 Feb;13(2):260-292. doi: 10.1038/nprot.2017.135. Epub 2018 Jan 4.
5
Novel combined crystallization plate for high-throughput crystal screening and in situ data collection at a crystallography beamline.高通量晶体筛选和晶体学光束线上原位数据收集的新型组合结晶板。
Acta Crystallogr F Struct Biol Commun. 2021 Sep 1;77(Pt 9):319-327. doi: 10.1107/S2053230X21008104. Epub 2021 Aug 24.
6
Screening Ligands by X-ray crystallography.通过X射线晶体学筛选配体。
Methods Mol Biol. 2014;1140:315-23. doi: 10.1007/978-1-4939-0354-2_23.
7
Iterative screen optimization maximizes the efficiency of macromolecular crystallization.迭代筛选优化可使大分子结晶效率最大化。
Acta Crystallogr F Struct Biol Commun. 2019 Feb 1;75(Pt 2):123-131. doi: 10.1107/S2053230X18017338. Epub 2019 Jan 24.
8
The Automated Crystallography Pipelines at the EMBL HTX Facility in Grenoble.格勒诺布尔欧洲分子生物学实验室 HTX 设施的自动化晶体学管道。
J Vis Exp. 2021 Jun 5(172). doi: 10.3791/62491.
9
In situ macromolecular crystallography using microbeams.使用微束的原位大分子晶体学。
Acta Crystallogr D Biol Crystallogr. 2012 May;68(Pt 5):592-600. doi: 10.1107/S0907444912006749. Epub 2012 Apr 17.
10
Automated classification of protein crystallization images using support vector machines with scale-invariant texture and Gabor features.使用具有尺度不变纹理和Gabor特征的支持向量机对蛋白质结晶图像进行自动分类。
Acta Crystallogr D Biol Crystallogr. 2006 Mar;62(Pt 3):271-9. doi: 10.1107/S0907444905041648. Epub 2006 Feb 22.

引用本文的文献

1
Does crossing the pond affect crystal quality?跨越池塘会影响晶体质量吗?
bioRxiv. 2025 Jun 17:2025.06.12.659325. doi: 10.1101/2025.06.12.659325.
2
rubrerythrin promiscuously binds metals in a structurally pre-formed bimetallic binding site.红氧还蛋白在结构预先形成的双金属结合位点中随意结合金属。
bioRxiv. 2025 Jun 1:2025.06.01.657255. doi: 10.1101/2025.06.01.657255.
3
Preparing for successful protein crystallization experiments.为成功的蛋白质结晶实验做准备。

本文引用的文献

1
20 years of crystal hits: progress and promise in ultrahigh-throughput crystallization screening.20 年的晶体碰撞:超高通量结晶筛选的进展与前景。
Acta Crystallogr D Struct Biol. 2023 Mar 1;79(Pt 3):198-205. doi: 10.1107/S2059798323001274. Epub 2023 Feb 27.
2
Second Harmonic Generation Interrogation of the Endonuclease APE1 Binding Interaction with G-Quadruplex DNA.二次谐波产生技术检测内切酶 APE1 与 G-四链体 DNA 的结合相互作用。
Anal Chem. 2022 Nov 1;94(43):15027-15032. doi: 10.1021/acs.analchem.2c02951. Epub 2022 Oct 21.
3
: an open-source graphical user interface for crystallization screening.
Acta Crystallogr F Struct Biol Commun. 2025 Jul 1;81(Pt 7):272-280. doi: 10.1107/S2053230X25004650. Epub 2025 Jun 2.
4
AlphaFold as a Prior: Experimental Structure Determination Conditioned on a Pretrained Neural Network.以AlphaFold为先验:基于预训练神经网络的实验结构测定
bioRxiv. 2025 Mar 11:2025.02.18.638828. doi: 10.1101/2025.02.18.638828.
5
Ascertaining a Structural Basis in Drug Discovery and Development.确定药物发现与开发中的结构基础。
J Med Chem. 2025 Mar 13;68(5):4991-4995. doi: 10.1021/acs.jmedchem.5c00326. Epub 2025 Feb 11.
6
Identification and characterization of substrate- and product-selective nylon hydrolases.底物和产物选择性尼龙水解酶的鉴定与表征
bioRxiv. 2024 Nov 14:2024.11.14.623603. doi: 10.1101/2024.11.14.623603.
7
Preparing research samples for safe arrival at centers and facilities: recipes for successful experiments.为安全到达中心和设施准备研究样本:成功实验的秘诀。
Acta Crystallogr F Struct Biol Commun. 2024 Aug 1;80(Pt 8):165-172. doi: 10.1107/S2053230X24006174. Epub 2024 Jul 11.
8
Systematic enhancement of protein crystallization efficiency by bulk lysine-to-arginine (KR) substitution.通过大量赖氨酸到精氨酸(KR)取代来系统地提高蛋白质结晶效率。
Protein Sci. 2024 Mar;33(3):e4898. doi: 10.1002/pro.4898.
用于结晶筛选的开源图形用户界面。
J Appl Crystallogr. 2021 Feb 19;54(Pt 2):673-679. doi: 10.1107/S1600576721000108. eCollection 2021 Apr 1.
4
A Searchable Database of Crystallization Cocktails in the PDB: Analyzing the Chemical Condition Space.蛋白质数据银行中可搜索的结晶鸡尾酒数据库:分析化学条件空间。
Patterns (N Y). 2020 Jul 10;1(4). doi: 10.1016/j.patter.2020.100024. Epub 2020 Apr 28.
5
Protein X-ray Crystallography and Drug Discovery.蛋白质 X 射线晶体学与药物发现。
Molecules. 2020 Feb 25;25(5):1030. doi: 10.3390/molecules25051030.
6
High-Throughput Crystallization Pipeline at the Crystallography Core Facility of the Institut Pasteur.巴斯德研究所晶体学核心设施的高通量结晶流水线。
Molecules. 2019 Dec 5;24(24):4451. doi: 10.3390/molecules24244451.
7
BLASTing away preconceptions in crystallization trials.在结晶试验中破除先入之见。
Acta Crystallogr F Struct Biol Commun. 2019 Mar 1;75(Pt 3):184-192. doi: 10.1107/S2053230X19000141. Epub 2019 Feb 21.
8
DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction.DeepCrystal:一个基于深度学习的序列蛋白质结晶预测框架。
Bioinformatics. 2019 Jul 1;35(13):2216-2225. doi: 10.1093/bioinformatics/bty953.
9
Classification of crystallization outcomes using deep convolutional neural networks.使用深度卷积神经网络对结晶结果进行分类。
PLoS One. 2018 Jun 20;13(6):e0198883. doi: 10.1371/journal.pone.0198883. eCollection 2018.
10
What's happened over the last five years with high-throughput protein crystallization screening?在过去五年里,高通量蛋白质结晶筛选领域发生了什么?
Expert Opin Drug Discov. 2018 Aug;13(8):691-695. doi: 10.1080/17460441.2018.1465924. Epub 2018 Apr 20.