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(乔丹和斯奈德,1900年)线粒体全基因组的比较分析,揭示鳗鲡目基因重排及系统发育关系

Comparative Analysis of Complete Mitochondrial Genome of (Jordan and Snider, 1900), Revealing Gene Rearrangement and the Phylogenetic Relationships of Anguilliformes.

作者信息

Huang Youkun, Zhu Kehua, Yang Yawei, Fang Liancheng, Liu Zhaowen, Ye Jia, Jia Caiyi, Chen Jianbin, Jiang Hui

机构信息

Anhui Provincial Key Laboratory for Quality and Safety of Agri-Products, School of Resource and Environment, Anhui Agricultural University, Hefei 230036, China.

State Key Laboratory of Estuarine and Coastal Research, Institute of Eco-Chongming, East China Normal University, Shanghai 200241, China.

出版信息

Biology (Basel). 2023 Feb 22;12(3):348. doi: 10.3390/biology12030348.

Abstract

The mitochondrial genome structure of a teleostean group is generally considered to be conservative. However, two types of gene arrangements have been identified in the mitogenomes of Anguilliformes. In this study, we report the complete mitochondrial genome of (Anguilliformes (Congridae)). For this research, first, the mitochondrial genome structure and composition were analyzed. As opposed to the typical gene arrangement pattern in other Anguilliformes species, the mitogenome of has undergone gene rearrangement. The and the conjoint genes were translocated to the location between the and genes, and a duplicated D-loop region was translocated to move upstream of the gene. Second, comparative genomic analysis was carried out between the mitogenomes of and . The gene arrangement between them was found to be highly consistent, against the published mitogenomes. Third, we reproduced the possible evolutionary process of gene rearrangement in mitogenomes and attributed such an occurrence to tandem repeat and random loss events. Fourth, a phylogenetic analysis of Anguilliformes was conducted, and the clustering results supported the non-monophyly hypothesis regarding the Congridae. This study is expected to provide a new perspective on the mitogenome and lay the foundation for the further exploration of gene rearrangement mechanisms.

摘要

硬骨鱼群的线粒体基因组结构通常被认为是保守的。然而,在鳗鲡目的线粒体基因组中已鉴定出两种基因排列类型。在本研究中,我们报告了(鳗鲡目(康吉鳗科))的完整线粒体基因组。对于这项研究,首先,分析了线粒体基因组的结构和组成。与其他鳗鲡目物种的典型基因排列模式不同,[该物种名称]的线粒体基因组发生了基因重排。[具体基因1]和相连的[具体基因2]基因被转移到[具体基因3]和[具体基因4]基因之间的位置,并且一个重复的D环区域被转移到[具体基因5]基因的上游。其次,对[该物种名称]和[另一物种名称]的线粒体基因组进行了比较基因组分析。发现它们之间的基因排列与已发表的[相关物种名称]线粒体基因组高度一致。第三,我们重现了[该物种名称]线粒体基因组中基因重排可能的进化过程,并将这种现象归因于串联重复和随机丢失事件。第四,对鳗鲡目进行了系统发育分析,聚类结果支持了关于康吉鳗科的非单系性假说。本研究有望为[该物种名称]线粒体基因组提供新的视角,并为进一步探索基因重排机制奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a197/10044991/4d349477719c/biology-12-00348-g001.jpg

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