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野生型拟南芥基因表达分析中候选内参基因的评估

Evaluation of Candidate Reference Genes for Gene Expression Analysis in Wild .

机构信息

School of Life Sciences, Qinghai Normal University, Xining 810008, China.

Academy of Plateau Science and Sustainability, Qinghai Normal University, Xining 810008, China.

出版信息

Genes (Basel). 2023 Feb 24;14(3):573. doi: 10.3390/genes14030573.

Abstract

(Benth.) Kudo is a perennial and unique medicinal plant of the Qinghai-Tibet Plateau. It has the effects of diminishing inflammation, activating blood circulation, removing blood stasis, reducing swelling, and relieving pain. However, thus far, reliable reference gene identifications have not been reported in wild . In this study, we identified suitable reference genes for the analysis of gene expression related to the medicinal compound synthesis in wild subjected to five different-altitude habitats. Based on the RNA-Seq data of wild from five different regions, the stability of 15 candidate internal reference genes was analyzed using geNorm, NormFinder, BestKeeper, and RefFinder. , , and were the most suitable internal reference genes in the leaves of from different regions, while , , and were the optimal reference genes in the roots of . The reference genes identified here would be very useful for gene expression studies with different tissues in from different habitats.

摘要

(Benth.)Kudo 是青藏高原特有的一种多年生药用植物,具有消炎、活血、化瘀、消肿止痛的功效。然而,迄今为止,尚未有关于野生 Kudo 中可靠的参考基因鉴定的报道。在这项研究中,我们鉴定了适用于分析与药用化合物合成相关的基因表达的参考基因,该研究以五种不同海拔生境的野生 Kudo 为研究对象。基于来自五个不同地区的野生 Kudo 的 RNA-Seq 数据,使用 geNorm、NormFinder、BestKeeper 和 RefFinder 分析了 15 个候选内参基因的稳定性。在不同地区的野生 Kudo 叶片中, 和 是最适合的内参基因,而 在野生 Kudo 的根中是最佳的参考基因。本研究中鉴定的这些参考基因将非常有助于不同生境下野生 Kudo 不同组织的基因表达研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ec/10048348/8a68d8679d8e/genes-14-00573-g001.jpg

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