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转录偶联修复的分子机制。

Molecular Mechanisms of Transcription-Coupled Repair.

机构信息

Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina, USA; email:

Department of Environmental Health Science, University of Georgia, Athens, Georgia, USA.

出版信息

Annu Rev Biochem. 2023 Jun 20;92:115-144. doi: 10.1146/annurev-biochem-041522-034232. Epub 2023 Mar 31.


DOI:10.1146/annurev-biochem-041522-034232
PMID:37001137
Abstract

Transcription-coupled repair (TCR), discovered as preferential nucleotide excision repair of UV-induced cyclobutane pyrimidine dimers located in transcribed mammalian genes compared to those in nontranscribed regions of the genome, is defined as faster repair of the transcribed strand versus the nontranscribed strand in transcribed genes. The phenomenon, universal in model organisms including , yeast, , mice, and humans, involves a translocase that interacts with both RNA polymerase stalled at damage in the transcribed strand and nucleotide excision repair proteins to accelerate repair. , a notable exception, exhibits TCR but lacks an obvious TCR translocase. Mutations inactivating TCR genes cause increased damage-induced mutagenesis in and severe neurological and UV sensitivity syndromes in humans. To date, only TCR has been reconstituted in vitro with purified proteins. Detailed investigations of TCR using genome-wide next-generation sequencing methods, cryo-electron microscopy, single-molecule analysis, and other approaches have revealed fascinating mechanisms.

摘要

转录偶联修复(TCR)是指与非转录区相比,在转录哺乳动物基因中紫外线诱导的环丁烷嘧啶二聚体优先进行核苷酸切除修复,它被定义为在转录基因中,相对于非转录链,转录链的修复更快。这一现象在包括酵母、小鼠和人类在内的模式生物中普遍存在,涉及一种转位酶,它与在转录链上受阻的 RNA 聚合酶和核苷酸切除修复蛋白相互作用,从而加速修复。是一个显著的例外,它表现出 TCR,但缺乏明显的 TCR 转位酶。失活 TCR 基因的突变会导致增加的损伤诱导突变在和严重的神经和紫外线敏感综合征在人类中。迄今为止,只有 TCR 已在体外用纯化蛋白重建。使用全基因组下一代测序方法、冷冻电子显微镜、单分子分析和其他方法对 TCR 进行的详细研究揭示了引人入胜的机制。

相似文献

[1]
Molecular Mechanisms of Transcription-Coupled Repair.

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[2]
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J Biol Chem. 2023-3

[3]
Genome-wide transcription-coupled repair in is mediated by the Mfd translocase.

Proc Natl Acad Sci U S A. 2017-3-14

[4]
Induction and repair of cyclobutane pyrimidine dimers in the Escherichia coli tRNA gene tyrT: Fis protein affects dimer induction in the control region and suppresses preferential repair in the coding region of the transcribed strand, except in a short region near the transcription start site.

J Mol Biol. 1997-8-8

[5]
Transcription-modulated repair in Escherichia coli evident with UV-induced mutation spectra in supF.

J Mol Biol. 1999-11-19

[6]
Transcription-coupled nucleotide excision repair of a gene transcribed by bacteriophage T7 RNA polymerase in Escherichia coli.

DNA Repair (Amst). 2010-7-17

[7]
, which lacks canonical transcription-coupled repair proteins, performs transcription-coupled repair.

J Biol Chem. 2019-10-17

[8]
Structural basis for transcription complex disruption by the Mfd translocase.

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[9]
Pervasive Transcription-coupled DNA repair in E. coli.

Nat Commun. 2022-3-30

[10]
Excision repair at individual bases of the Escherichia coli lacI gene: relation to mutation hot spots and transcription coupling activity.

Proc Natl Acad Sci U S A. 1992-11-15

引用本文的文献

[1]
Single-cell transcriptomic and genomic changes in the ageing human brain.

Nature. 2025-9-3

[2]
Transcription-Coupled Nucleotide Excision Repair: A Faster Solution or the Only Option?

Biomolecules. 2025-7-16

[3]
Transcription-Coupled Repair and R-Loop Crosstalk in Genome Stability.

Int J Mol Sci. 2025-4-16

[4]
Recommendations for robust and reproducible research on ferroptosis.

Nat Rev Mol Cell Biol. 2025-4-9

[5]
Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage.

Genome Biol Evol. 2025-3-6

[6]
Nucleotide Excision Repair: Insights into Canonical and Emerging Functions of the Transcription/DNA Repair Factor TFIIH.

Genes (Basel). 2025-2-19

[7]
ATP-Dependent Chromatin Remodeler CSB Couples DNA Repair Pathways to Transcription with Implications for Cockayne Syndrome and Cancer Therapy.

Cells. 2025-2-7

[8]
Proteins Associated with Neurodegenerative Diseases: Link to DNA Repair.

Biomedicines. 2024-12-11

[9]
STK19 positions TFIIH for cell-free transcription-coupled DNA repair.

Cell. 2024-12-12

[10]
Dynamics of transcription-coupled repair of cyclobutane pyrimidine dimers and (6-4) photoproducts in .

Proc Natl Acad Sci U S A. 2024-10-29

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