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全基因组 DNA 甲基化谱分析在小儿型弥漫性神经胶质瘤中的应用。

Utility of genome-wide DNA methylation profiling for pediatric-type diffuse gliomas.

机构信息

Department of Neurological Surgery, Okayama University Graduate School of Medicine, Dentistry, and Pharmaceutical Sciences, 2-5-1 Shikata-Cho, Kita-Ku, Okayama, 700-8558, Japan.

Department of Pathology, Kyorin University School of Medicine, 6-20-2 Shinkawa, Mitaka-Shi, Tokyo, 181-8611, Japan.

出版信息

Brain Tumor Pathol. 2023 Apr;40(2):56-65. doi: 10.1007/s10014-023-00457-6. Epub 2023 Apr 1.

DOI:10.1007/s10014-023-00457-6
PMID:37004583
Abstract

Despite the current progress of treatment, pediatric-type diffuse glioma is one of the most lethal primary malignant tumors in the central nervous system (CNS). Since pediatric-type CNS tumors are rare disease entities and highly heterogeneous, the diagnosis is challenging. An accurate diagnosis is essential for the choice of optimal treatment, which leads to precision oncology and improvement of the patient's outcome. Genome-wide DNA methylation profiling recently emerged as one of the most important tools for the diagnosis of CNS tumors, and the utility of this novel assay has been reported in both pediatric and adult patients. In the current World Health Organization classification published in 2021, several new entities are recognized in pediatric-type diffuse gliomas, some of which require methylation profiling. In this review, we investigated the utility of genome-wide DNA methylation profiling in pediatric-type diffuse glioma, as well as issues in the clinical application of this assay. Furthermore, the combination of genome-wide DNA methylation profiling and other comprehensive genomic assays, which may improve diagnostic accuracy and detection of the actionable target, will be discussed.

摘要

尽管目前治疗取得了进展,但小儿型弥漫性神经胶质瘤仍是中枢神经系统(CNS)中最致命的原发性恶性肿瘤之一。由于小儿型 CNS 肿瘤是罕见的疾病实体,且高度异质,因此诊断具有挑战性。准确的诊断对于选择最佳治疗方案至关重要,这将导致精准肿瘤学和改善患者的预后。全基因组 DNA 甲基化分析最近成为 CNS 肿瘤诊断的最重要工具之一,该新检测方法已在儿科和成人患者中得到报道。在 2021 年发布的现行世界卫生组织分类中,小儿型弥漫性神经胶质瘤中确认了几个新实体,其中一些需要进行甲基化分析。在这篇综述中,我们研究了全基因组 DNA 甲基化分析在小儿型弥漫性神经胶质瘤中的应用,以及该检测方法在临床应用中的问题。此外,还将讨论全基因组 DNA 甲基化分析与其他综合基因组检测方法的结合,这可能会提高诊断准确性和可操作靶点的检测。

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Molecular diagnostics enables detection of actionable targets: the Pediatric Targeted Therapy 2.0 registry.分子诊断可检测到可操作的靶点:儿科靶向治疗 2.0 注册中心。
Eur J Cancer. 2023 Feb;180:71-84. doi: 10.1016/j.ejca.2022.11.015. Epub 2022 Nov 25.
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The landscape of tumor cell states and spatial organization in H3-K27M mutant diffuse midline glioma across age and location.H3-K27M 突变弥漫性中线胶质瘤在年龄和位置上的肿瘤细胞状态和空间组织景观。
Nat Genet. 2022 Dec;54(12):1881-1894. doi: 10.1038/s41588-022-01236-3. Epub 2022 Dec 5.
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Methylation Profiling in Diffuse Gliomas: Diagnostic Value and Considerations.
弥漫性胶质瘤中的甲基化分析:诊断价值与考量
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Current Insights into Mesenchymal Signatures in Glioblastoma.胶质母细胞瘤中间充质特征的当前见解
Acta Med Okayama. 2022 Oct;76(5):489-502. doi: 10.18926/AMO/64024.
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Genomic Profiling of a Case of Glioneuronal Tumor with Neuropil-like Islands.神经胶神经元肿瘤伴神经毡样岛的基因组分析
Acta Med Okayama. 2022 Aug;76(4):473-477. doi: 10.18926/AMO/63907.
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The utility of DNA methylation analysis in elderly patients with pilocytic astrocytoma morphology.老年具有毛细胞型星形细胞瘤形态患者中 DNA 甲基化分析的效用。
J Neurooncol. 2022 Oct;160(1):179-189. doi: 10.1007/s11060-022-04131-3. Epub 2022 Sep 15.
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Systematic review of diffuse hemispheric glioma, H3 G34-mutant: Outcomes and associated clinical factors.弥漫性半球胶质瘤H3 G34突变型的系统评价:预后及相关临床因素
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