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瞬时突变偏倚增加了经验基因型-表型景观上进化的可预测性。

Transient mutation bias increases the predictability of evolution on an empirical genotype-phenotype landscape.

机构信息

Milner Centre for Evolution, Department of Life Sciences, University of Bath, Claverton Down, Bath BA2 7AY, UK.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2023 May 22;378(1877):20220043. doi: 10.1098/rstb.2022.0043. Epub 2023 Apr 3.

DOI:10.1098/rstb.2022.0043
PMID:37004722
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10067260/
Abstract

Predicting how a population will likely navigate a genotype-phenotype landscape requires consideration of selection in combination with mutation bias, which can skew the likelihood of following a particular trajectory. Strong and persistent directional selection can drive populations to ascend toward a peak. However, with a greater number of peaks and more routes to reach them, adaptation inevitably becomes less predictable. Transient mutation bias, which operates only on one mutational step, can influence landscape navigability by biasing the mutational trajectory early in the adaptive walk. This sets an evolving population upon a particular path, constraining the number of accessible routes and making certain peaks and routes more likely to be realized than others. In this work, we employ a model system to investigate whether such transient mutation bias can reliably and predictably place populations on a mutational trajectory to the strongest selective phenotype or usher populations to realize inferior phenotypic outcomes. For this we use motile mutants evolved from ancestrally non-motile variants of the microbe SBW25, of which one trajectory exhibits significant mutation bias. Using this system, we elucidate an empirical genotype-phenotype landscape, where the hill-climbing process represents increasing strength of the motility phenotype, to reveal that transient mutation bias can facilitate rapid and predictable ascension to the strongest observed phenotype in place of equivalent and inferior trajectories. This article is part of the theme issue 'Interdisciplinary approaches to predicting evolutionary biology'.

摘要

预测群体可能如何在基因型-表型景观中进行导航,需要考虑选择与突变偏向相结合,这可能会使特定轨迹的可能性发生偏斜。强大且持续的定向选择可以驱使群体向峰值上升。然而,随着峰值数量的增加和到达它们的更多途径,适应性不可避免地变得更难以预测。仅在一个突变步骤上起作用的瞬时突变偏向可以通过在适应性进化的早期偏转变异轨迹来影响景观的可导航性。这使不断进化的种群处于特定的路径上,限制了可访问的路径数量,并使某些峰值和路径比其他路径更有可能实现。在这项工作中,我们使用模型系统来研究这种瞬时突变偏向是否可以可靠且可预测地将种群置于最强选择性表型的突变轨迹上,或者引导种群实现较差的表型结果。为此,我们使用从微生物 SBW25 的祖先非运动变体进化而来的运动突变体,其中一个轨迹表现出显著的突变偏向。使用该系统,我们阐明了一个经验基因型-表型景观,其中爬山过程代表运动表型强度的增加,以揭示瞬时突变偏向可以促进快速且可预测地上升到最强的观察表型,而不是等效和较差的轨迹。本文是主题为“预测进化生物学的跨学科方法”的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/8b5053c07c4b/rstb20220043f04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/34488f791964/rstb20220043f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/53c8c8ebf96f/rstb20220043f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/3bbcfceb6103/rstb20220043f03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/8b5053c07c4b/rstb20220043f04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/34488f791964/rstb20220043f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/53c8c8ebf96f/rstb20220043f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/3bbcfceb6103/rstb20220043f03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/24c2/10067260/8b5053c07c4b/rstb20220043f04.jpg

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Shifts in mutation spectra enhance access to beneficial mutations.突变谱的转变增强了有益突变的获得。
Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2207355120. doi: 10.1073/pnas.2207355120. Epub 2023 May 22.
3
A near-deterministic mutational hotspot in Pseudomonas fluorescens is constructed by multiple interacting genomic features.
Microbiology (Reading). 2023 Oct;169(10). doi: 10.1099/mic.0.001395.
4
Interdisciplinary approaches to predicting evolutionary biology.预测进化生物学的跨学科方法。
Philos Trans R Soc Lond B Biol Sci. 2023 May 22;378(1877):20220042. doi: 10.1098/rstb.2022.0042. Epub 2023 Apr 3.
荧光假单胞菌中一个近乎确定性的突变热点是由多个相互作用的基因组特征构建而成的。
Mol Biol Evol. 2022 Jun 16;39(6). doi: 10.1093/molbev/msac132.
4
Population size mediates the contribution of high-rate and large-benefit mutations to parallel evolution.种群大小调节了高速率和大收益突变对并行进化的贡献。
Nat Ecol Evol. 2022 Apr;6(4):439-447. doi: 10.1038/s41559-022-01669-3. Epub 2022 Mar 3.
5
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