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新型硫代氨基脲量子点结合使用指纹图谱和物理化学描述符的计算机模拟模型治疗阿尔茨海默病

Novel Thiosemicarbazone Quantum Dots in the Treatment of Alzheimer's Disease Combining In Silico Models Using Fingerprints and Physicochemical Descriptors.

作者信息

Minh Quang Nguyen, Tran Thai Hoa, Le Thi Hoa, Duc Cuong Nguyen, Hien Nguyen Quoc, Hoang DongQuy, Ngoc Vu Thi Bao, Ky Minh Vo, Van Tat Pham

机构信息

Faculty of Chemical Engineering, Industrial University of Ho Chi Minh City, 12 Nguyen Van Bao, Dist. Go Vap, Ho Chi Minh 700000, Viet Nam.

Faculty of Chemistry, Hue University of Sciences, Hue University, 77 Nguyen Hue, Hue City 530000, Viet Nam.

出版信息

ACS Omega. 2023 Mar 17;8(12):11076-11099. doi: 10.1021/acsomega.2c07934. eCollection 2023 Mar 28.

DOI:10.1021/acsomega.2c07934
PMID:37008140
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10061515/
Abstract

Searching for thiosemicarbazone derivatives with the potential to inhibit acetylcholinesterase for the treatment of Alzheimer's disease (AD) is an important current goal. The QSAR, QSAR, and QSAR models were constructed using binary fingerprints and physicochemical (PC) descriptors of 129 thiosemicarbazone compounds screened from a database of 3791 derivatives. The and values for the QSAR, QSAR, and QSAR models are greater than 0.925 and 0.713 using dendritic fingerprint (DF) and PC descriptors, respectively. The in vitro pIC activities of four new design-oriented compounds , , , and , from the QSAR model using DFs, are consistent with the experimental results and those from the QSAR and QSAR models. The designed compounds , , , and do not violate Lipinski-5 and Veber rules using the ADME and BoiLED-Egg methods. The binding energy, kcal mol, of the novel compounds to the 1ACJ-PDB protein receptor of the AChE enzyme was also obtained by molecular docking and dynamics simulations consistent with those predicted from the QSAR and QSAR models. New compounds , , , and were synthesized, and the experimental in vitro pIC activity was determined in agreement with those obtained from in silico models. The newly synthesized thiosemicarbazones , , , and can inhibit 1ACJ-PDB, which is predicted to be able to cross the barrier. The DFT B3LYP/def-SV(P)-ECP quantization calculation method was used to calculate and to account for the activities of compounds , , , and . The quantum calculation results explained are consistent with those obtained in in silico models. The successful results here may contribute to the search for new drugs for the treatment of AD.

摘要

寻找具有抑制乙酰胆碱酯酶潜力以治疗阿尔茨海默病(AD)的硫代氨基脲衍生物是当前的一个重要目标。使用从3791种衍生物数据库中筛选出的129种硫代氨基脲化合物的二元指纹和物理化学(PC)描述符构建了QSAR、QSAR和QSAR模型。使用树状指纹(DF)和PC描述符时,QSAR、QSAR和QSAR模型的 和 值分别大于0.925和0.713。使用DFs的QSAR模型中四种新的面向设计的化合物 、 、 和 的体外pIC活性与实验结果以及QSAR和QSAR模型的结果一致。使用ADME和BoiLED-Egg方法,设计的化合物 、 、 和 不违反Lipinski-5规则和Veber规则。通过分子对接和动力学模拟还获得了新型化合物与AChE酶的1ACJ-PDB蛋白受体的结合能(千卡/摩尔),这与QSAR和QSAR模型预测的结果一致。合成了新化合物 、 、 和 ,并测定了与计算机模拟模型获得的结果一致的体外pIC实验活性。新合成的硫代氨基脲 、 、 和 能够抑制1ACJ-PDB,预计其能够穿过血脑屏障。使用DFT B3LYP/def-SV(P)-ECP量子计算方法计算 和 以解释化合物 、 、 和 的活性。所解释的量子计算结果与计算机模拟模型中获得的结果一致。此处的成功结果可能有助于寻找治疗AD的新药。

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