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兰尼肽 Curvocidin 的发现及其多功能合成酶 CuvL 的结构见解。

Discovery of the Lanthipeptide Curvocidin and Structural Insights into its Trifunctional Synthetase CuvL.

机构信息

Fakultät II-Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 124, 10623, Berlin, Germany.

Institut für Biologie-Strukturbiologie/Biochemie, Humboldt Universität zu Berlin, Philippstraße 13, 10115, Berlin, Germany.

出版信息

Angew Chem Int Ed Engl. 2023 Jun 5;62(23):e202302490. doi: 10.1002/anie.202302490. Epub 2023 Apr 27.

Abstract

Lanthipeptides are ribosomally-synthesized natural products from bacteria featuring stable thioether-crosslinks and various bioactivities. Herein, we report on a new clade of tricyclic class-IV lanthipeptides with curvocidin from Thermomonospora curvata as its first representative. We obtained crystal structures of the corresponding lanthipeptide synthetase CuvL that showed a circular arrangement of its kinase, lyase and cyclase domains, forming a central reaction chamber for the iterative substrate processing involving nine catalytic steps. The combination of experimental data and artificial intelligence-based structural models identified the N-terminal subdomain of the kinase domain as the primary site of substrate recruitment. The ribosomal precursor peptide of curvocidin employs an amphipathic α-helix in its leader region as an anchor to CuvL, while its substrate core shuttles within the central reaction chamber. Our study thus reveals general principles of domain organization and substrate recruitment of class-IV and class-III lanthipeptide synthetases.

摘要

硫肽是一类由细菌产生的核糖体合成的天然产物,具有稳定的硫醚键和多种生物活性。本文报道了一类新的三环 IV 类硫肽,以热单胞菌 curvocidin 为其第一个代表。我们获得了相应的硫肽合成酶 CuvL 的晶体结构,该结构显示其激酶、裂解酶和环化酶结构域呈圆形排列,形成一个中央反应室,用于涉及九个催化步骤的迭代底物加工。实验数据和基于人工智能的结构模型的结合确定了激酶结构域的 N 端亚结构域是底物募集的主要部位。 curvocidin 的核糖体前体肽在其前导区使用一个两亲性的α-螺旋作为与 CuvL 的锚定点,而其底物核心在中央反应室中穿梭。因此,我们的研究揭示了 IV 类和 III 类硫肽合成酶的结构域组织和底物募集的一般原则。

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