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miR-6087可能在人胚胎干细胞心肌生成过程中调控细胞周期相关的信使核糖核酸。

miR-6087 Might Regulate Cell Cycle-Related mRNAs During Cardiomyogenesis of hESCs.

作者信息

Machado Hellen Cristine, Bispo Saloe, Dallagiovanna Bruno

机构信息

Laboratory of Basic Stem-Cell Biology, Instituto Carlos Chagas - FIOCRUZ-PR, Curitiba, Brazil.

Laboratory of Molecular and Systems Biology of Trypanosomatids, Instituto Carlos Chagas - FIOCRUZ-PR, Curitiba, Brazil.

出版信息

Bioinform Biol Insights. 2023 Mar 30;17:11779322231161918. doi: 10.1177/11779322231161918. eCollection 2023.

Abstract

MicroRNAs (miRNAs) are small noncoding RNAs that act as negative regulators of gene expression at the post-transcriptional level, promoting mRNA degradation or translation repression. Despite the well-described presence of miRNAs in various human tissues, there is still a lack of information about the relationship between miRNAs and the translation regulation in human embryonic stem cells (hESCs) during cardiomyogenesis. Here, we investigate RNA-seq data from hESCs, focusing on distinct stages of cardiomyogenesis and searching for polysome-bound miRNAs that could be involved in translational regulation. We identify miR-6087 as a differentially expressed miRNA at latest steps of cardiomyocyte differentiation. We analyzed the coexpression pattern between the differentially expressed mRNAs and miR-6087, evaluating whether they are predicted targets of the miRNA. We arranged the genes into an interaction network and identified , and as key genes of the network. A analysis of the key genes suggests that miR-6087 could act as a regulator of the cell cycle in hESC during cardiomyogenesis.

摘要

微小RNA(miRNA)是一类小的非编码RNA,在转录后水平作为基因表达的负调控因子,促进mRNA降解或翻译抑制。尽管在各种人体组织中miRNA的存在已被充分描述,但关于miRNA与人类胚胎干细胞(hESC)心肌发生过程中翻译调控之间的关系仍缺乏信息。在此,我们研究了来自hESC的RNA测序数据,重点关注心肌发生的不同阶段,并寻找可能参与翻译调控的多聚核糖体结合miRNA。我们将miR-6087鉴定为心肌细胞分化后期差异表达的miRNA。我们分析了差异表达的mRNA与miR-6087之间的共表达模式,评估它们是否为该miRNA的预测靶标。我们将这些基因排列成一个相互作用网络,并鉴定出 、 和 作为该网络的关键基因。对关键基因的 分析表明,miR-6087在心肌发生过程中可能作为hESC细胞周期的调节因子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/77f0/10069004/5a02db5ce207/10.1177_11779322231161918-fig1.jpg

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本文引用的文献

1
Control of cardiomyocyte differentiation timing by intercellular signaling pathways.
Semin Cell Dev Biol. 2021 Oct;118:94-106. doi: 10.1016/j.semcdb.2021.06.002. Epub 2021 Jun 16.
2
Functions of BLM Helicase in Cells: Is It Acting Like a Double-Edged Sword?
Front Genet. 2021 Mar 12;12:634789. doi: 10.3389/fgene.2021.634789. eCollection 2021.
4
UniProt: the universal protein knowledgebase in 2021.
Nucleic Acids Res. 2021 Jan 8;49(D1):D480-D489. doi: 10.1093/nar/gkaa1100.
5
The Key Role of MicroRNAs in Self-Renewal and Differentiation of Embryonic Stem Cells.
Int J Mol Sci. 2020 Aug 31;21(17):6285. doi: 10.3390/ijms21176285.
6
Molecular Signatures and Networks of Cardiomyocyte Differentiation in Humans and Mice.
Mol Ther Nucleic Acids. 2020 Sep 4;21:696-711. doi: 10.1016/j.omtn.2020.07.011. Epub 2020 Jul 10.
7
Polysome-associated lncRNAs during cardiomyogenesis of hESCs.
Mol Cell Biochem. 2020 May;468(1-2):35-45. doi: 10.1007/s11010-020-03709-7. Epub 2020 Mar 3.
8
ShinyGO: a graphical gene-set enrichment tool for animals and plants.
Bioinformatics. 2020 Apr 15;36(8):2628-2629. doi: 10.1093/bioinformatics/btz931.
9
The biochemical basis of microRNA targeting efficacy.
Science. 2019 Dec 20;366(6472). doi: 10.1126/science.aav1741. Epub 2019 Dec 5.
10
MiR-199a-3p inhibition facilitates cardiomyocyte differentiation of embryonic stem cell through promotion of MEF2C.
J Cell Physiol. 2019 Dec;234(12):23315-23325. doi: 10.1002/jcp.28899. Epub 2019 May 29.

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