Machado Hellen Cristine, Bispo Saloe, Dallagiovanna Bruno
Laboratory of Basic Stem-Cell Biology, Instituto Carlos Chagas - FIOCRUZ-PR, Curitiba, Brazil.
Laboratory of Molecular and Systems Biology of Trypanosomatids, Instituto Carlos Chagas - FIOCRUZ-PR, Curitiba, Brazil.
Bioinform Biol Insights. 2023 Mar 30;17:11779322231161918. doi: 10.1177/11779322231161918. eCollection 2023.
MicroRNAs (miRNAs) are small noncoding RNAs that act as negative regulators of gene expression at the post-transcriptional level, promoting mRNA degradation or translation repression. Despite the well-described presence of miRNAs in various human tissues, there is still a lack of information about the relationship between miRNAs and the translation regulation in human embryonic stem cells (hESCs) during cardiomyogenesis. Here, we investigate RNA-seq data from hESCs, focusing on distinct stages of cardiomyogenesis and searching for polysome-bound miRNAs that could be involved in translational regulation. We identify miR-6087 as a differentially expressed miRNA at latest steps of cardiomyocyte differentiation. We analyzed the coexpression pattern between the differentially expressed mRNAs and miR-6087, evaluating whether they are predicted targets of the miRNA. We arranged the genes into an interaction network and identified , and as key genes of the network. A analysis of the key genes suggests that miR-6087 could act as a regulator of the cell cycle in hESC during cardiomyogenesis.
微小RNA(miRNA)是一类小的非编码RNA,在转录后水平作为基因表达的负调控因子,促进mRNA降解或翻译抑制。尽管在各种人体组织中miRNA的存在已被充分描述,但关于miRNA与人类胚胎干细胞(hESC)心肌发生过程中翻译调控之间的关系仍缺乏信息。在此,我们研究了来自hESC的RNA测序数据,重点关注心肌发生的不同阶段,并寻找可能参与翻译调控的多聚核糖体结合miRNA。我们将miR-6087鉴定为心肌细胞分化后期差异表达的miRNA。我们分析了差异表达的mRNA与miR-6087之间的共表达模式,评估它们是否为该miRNA的预测靶标。我们将这些基因排列成一个相互作用网络,并鉴定出 、 和 作为该网络的关键基因。对关键基因的 分析表明,miR-6087在心肌发生过程中可能作为hESC细胞周期的调节因子。