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一体化交错链交换扩增平台的快速灵敏检测

Rapid and sensitive detection of an all-in-one staggered strand exchange amplification platform.

作者信息

Zhang Jian, Han Xiangning, Wang Ye, Mu Xiaofeng, Shi Chao, Li Yong, Ma Cuiping

机构信息

Shandong Provincial Key Laboratory of Biochemical Engineering, Qingdao Nucleic Acid Rapid Detection Engineering Research Center, Qingdao Key Laboratory of Nucleic Acid Rapid Detection, College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China.

Clinical Laboratory, Qingdao Central Hospital, The Second Affiliated Hospital of Medical College of Qingdao University, Qingdao, 266042, China.

出版信息

Analyst. 2023 May 2;148(9):1970-1977. doi: 10.1039/d2an02092k.

Abstract

is a common foodborne pathogen that causes food poisoning and infectious diseases in humans and animals. Rapid detection of with high sensitivity is of great significance to prevent the spread of this pathogen. In this study, we developed a staggered strand exchange amplification (SSEA) method by refining denaturation bubble-mediated strand exchange amplification (SEA) to detect at a constant temperature with high specificity and efficiency. This method employs a DNA polymerase and two sets of forward and reverse primers arranged in tandem that invade denaturation bubbles of double-stranded DNA. In comparison, the sensitivity of SSEA was 20 times that of SEA. Subsequently, magnetic bead (MB)-based DNA extraction was introduced into SSEA to establish an all-in-one SSEA platform that incorporated sample processing, amplification and detection in a single tube. The use of MBs further enhanced the sensitivity of SSEA by two orders of magnitude. Specificity tests showed that the all-in-one SSEA could specifically identify and had no cross-reaction with other common foodborne pathogens. For artificially spiked meat samples, the method could detect 1.0 × 10 CFU g in pork and 1.0 × 10 CFU g in either duck or scallop samples without a bacterial enrichment step. The entire assay can be completed sample-to-answer within 1 h. Thus, we believe that this easy-to-operate diagnostic platform enables sensitive and accurate detection of and holds great promise for the food safety industry.

摘要

是一种常见的食源性病原体,可导致人类和动物食物中毒及传染病。高灵敏度快速检测该病原体对于预防其传播具有重要意义。在本研究中,我们通过优化变性气泡介导的链置换扩增(SEA)开发了一种交错链置换扩增(SSEA)方法,以在恒温下高特异性、高效率地检测该病原体。该方法使用一种DNA聚合酶和两组串联排列的正向和反向引物,它们侵入双链DNA的变性气泡。相比之下,SSEA的灵敏度是SEA的20倍。随后,将基于磁珠(MB)的DNA提取引入SSEA,建立了一个一体化的SSEA平台,该平台在单个管中整合了样品处理、扩增和检测。MB的使用进一步将SSEA的灵敏度提高了两个数量级。特异性测试表明,一体化SSEA可以特异性识别该病原体,并且与其他常见食源性病原体无交叉反应。对于人工加标的肉类样品,该方法无需细菌富集步骤即可检测出猪肉中1.0×10 CFU/g以及鸭肉或扇贝样品中1.0×10 CFU/g的该病原体。整个检测可在1小时内完成从样品到结果的过程。因此,我们认为这个易于操作的诊断平台能够灵敏、准确地检测该病原体,对食品安全行业具有巨大的应用前景。

不过原文中存在一些表述不完整的地方,比如“1.0 × 10 CFU g”这样的表述。

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