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一项泛癌分析揭示CHD1L作为几种人类癌症中的一种预后和免疫生物标志物。

A pan-cancer analysis reveals CHD1L as a prognostic and immunological biomarker in several human cancers.

作者信息

Soltan Mohamed A, Eldeen Muhammad Alaa, Eid Refaat A, Alyamani Najiah M, Alqahtani Leena S, Albogami Sarah, Jafri Ibrahim, Park Moon Nyeo, Alsharif Ghadi, Fayad Eman, Mohamed Gamal, Osman Rihab, Kim Bonglee, Zaki Mohamed Samir A

机构信息

Department of Microbiology and Immunology, Faculty of Pharmacy, Sinai University, Ismailia, Egypt.

Cell Biology, Histology and Genetics Division, Zoology Department, Faculty of Science, Zagazig University, Zagazig, Egypt.

出版信息

Front Mol Biosci. 2023 Mar 23;10:1017148. doi: 10.3389/fmolb.2023.1017148. eCollection 2023.

Abstract

Several recent studies pointed out that chromodomain-helicase-DNA-binding protein 1-like (CHD1L) is a putative oncogene in many human tumors. However, up to date, there is no pan-cancer analysis performed to study the different aspects of this gene expression and behavior in tumor tissues. Here, we applied several bioinformatics tools to make a comprehensive analysis for CHD1L. Firstly we assessed the expression of CHD1L in several types of human tumors and tried to correlate that with the stage and grade of the analyzed tumors. Following that, we performed a survival analysis to study the correlation between CHD1L upregulation in tumors and the clinical outcome. Additionally, we investigated the mutation forms, the correlation with several immune cell infiltration, and the potential molecular mechanisms of CHD1L in the tumor tissue. The results demonstrated that CHD1L is a highly expressed gene across several types of tumors and that was correlated with a poor prognosis for most cancer patients. Moreover, it was found that CHD1L affects the tumor immune microenvironment by influencing the infiltration level of several immune cells. Collectively, the current study provides a comprehensive overview of the oncogenic roles of CHD1L where our results nominate CHD1L as a potential prognostic biomarker and target for antitumor therapy development.

摘要

最近的几项研究指出,类染色质结构域解旋酶DNA结合蛋白1(CHD1L)在许多人类肿瘤中是一种假定的致癌基因。然而,迄今为止,尚未进行全癌分析来研究该基因在肿瘤组织中的表达和行为的不同方面。在此,我们应用了几种生物信息学工具对CHD1L进行全面分析。首先,我们评估了CHD1L在几种类型人类肿瘤中的表达,并试图将其与所分析肿瘤的分期和分级相关联。在此之后,我们进行了生存分析,以研究肿瘤中CHD1L上调与临床结果之间的相关性。此外,我们研究了CHD1L在肿瘤组织中的突变形式、与几种免疫细胞浸润的相关性以及潜在的分子机制。结果表明,CHD1L在几种类型的肿瘤中都是高表达基因,并且这与大多数癌症患者的不良预后相关。此外,发现CHD1L通过影响几种免疫细胞的浸润水平来影响肿瘤免疫微环境。总的来说,本研究提供了CHD1L致癌作用的全面概述,我们的结果表明CHD1L是一种潜在的预后生物标志物和抗肿瘤治疗开发的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f1f/10076660/fc3585bfe632/fmolb-10-1017148-g001.jpg

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