Department of Molecular Biotechnology and Health Sciences, Hematology Division, University of Torino, Torino, Italy.
Methods Mol Biol. 2023;2621:57-72. doi: 10.1007/978-1-0716-2950-5_5.
MYD88 is a gain-of-function mutation, arising from the missense alteration c.794T>C, that frequently occurs in B-cell malignancies such as Waldenstrom macroglobulinemia and less frequently in IgM monoclonal gammopathy of undetermined significance (IgM-MGUS) or other lymphomas. MYD88 has been recognized as a relevant diagnostic flag, but also as a valid prognostic and predictive biomarker, as well as an investigated therapeutic target. Up until now, allele-specific quantitative PCR (ASqPCR) has been widely used for MYD88 detection providing a higher level of sensitivity than Sanger sequencing. However, the recently developed droplet digital PCR (ddPCR) shows a deeper sensitivity, compared to ASqPCR, that is necessary for screening low infiltrated samples. Actually, ddPCR could represent an improvement in daily laboratory practice since it allows mutation detection in unselected tumor cells, allowing to bypass the time-consuming and costly B-cell selection procedure. ddPCR accuracy has been recently proved to be suitable also for mutation detection in "liquid biopsy" samples that might be used as a noninvasive and patient-friendly alternative to bone marrow aspiration especially during the disease monitoring. The relevance of MYD88, both in daily management of patients and in prospective clinical trials investigating the efficacy of novel agents, makes crucial to find a sensitive, accurate, and reliable molecular technique for mutation detection. Here, we propose a protocol for MYD88 detection by ddPCR.
MYD88 是一种功能获得性突变,源于错义改变 c.794T>C,常发生于 B 细胞恶性肿瘤,如华氏巨球蛋白血症,较少发生于免疫球蛋白 M 单克隆丙种球蛋白病(IgM-MGUS)或其他淋巴瘤。MYD88 已被认为是一个相关的诊断标志物,但也是一个有效的预后和预测生物标志物,以及一个研究中的治疗靶点。到目前为止,等位基因特异性定量 PCR(ASqPCR)已广泛用于 MYD88 检测,提供了比 Sanger 测序更高的灵敏度。然而,最近开发的液滴数字 PCR(ddPCR)与 ASqPCR 相比具有更深的灵敏度,对于筛选低浸润样本是必要的。实际上,ddPCR 可能代表了日常实验室实践的改进,因为它允许在未经选择的肿瘤细胞中检测突变,从而避免了费时且昂贵的 B 细胞选择过程。ddPCR 的准确性最近已被证明也适用于“液体活检”样本中的突变检测,这些样本可能作为骨髓抽吸的非侵入性和患者友好的替代方法,特别是在疾病监测期间。MYD88 在患者日常管理和正在进行的新型药物疗效的前瞻性临床试验中的相关性,使得寻找一种敏感、准确、可靠的突变检测分子技术变得至关重要。在这里,我们提出了一种使用 ddPCR 检测 MYD88 的方案。