Jiang Jici, Li Jiayu, Li Junxian, Pei Hongdi, Li Mingxin, Zou Quan, Lv Zhibin
College of Biomedical Engineering, Sichuan University, Chengdu 610065, China.
College of Life Science, Sichuan University, Chengdu 610065, China.
Foods. 2023 Apr 2;12(7):1498. doi: 10.3390/foods12071498.
Umami peptides enhance the umami taste of food and have good food processing properties, nutritional value, and numerous potential applications. Wet testing for the identification of umami peptides is a time-consuming and expensive process. Here, we report the iUmami-DRLF that uses a logistic regression (LR) method solely based on the deep learning pre-trained neural network feature extraction method, unified representation (UniRep based on multiplicative LSTM), for feature extraction from the peptide sequences. The findings demonstrate that deep learning representation learning significantly enhanced the capability of models in identifying umami peptides and predictive precision solely based on peptide sequence information. The newly validated taste sequences were also used to test the iUmami-DRLF and other predictors, and the result indicates that the iUmami-DRLF has better robustness and accuracy and remains valid at higher probability thresholds. The iUmami-DRLF method can aid further studies on enhancing the umami flavor of food for satisfying the need for an umami-flavored diet.
鲜味肽可增强食物的鲜味,具有良好的食品加工特性、营养价值和众多潜在应用。用于鉴定鲜味肽的湿实验是一个耗时且昂贵的过程。在此,我们报告了iUmami-DRLF,它使用仅基于深度学习预训练神经网络特征提取方法(基于乘法长短期记忆网络的统一表示,即UniRep)的逻辑回归(LR)方法,从肽序列中提取特征。研究结果表明,深度学习表示学习显著增强了模型仅基于肽序列信息识别鲜味肽的能力和预测精度。新验证的味觉序列也用于测试iUmami-DRLF和其他预测器,结果表明iUmami-DRLF具有更好的稳健性和准确性,并且在更高的概率阈值下仍然有效。iUmami-DRLF方法有助于进一步研究增强食物的鲜味,以满足对鲜味饮食的需求。
Int J Mol Sci. 2022-7-17
Foods. 2022-11-21
Brief Bioinform. 2021-9-2
Comput Struct Biotechnol J. 2022-6-8
Bioinformatics. 2023-2-3
Foods. 2022-11-21
IEEE Trans Neural Syst Rehabil Eng. 2022
Bioinformatics. 2022-11-15
Nat Commun. 2022-8-22
Int J Mol Sci. 2022-7-17